miRNA display CGI


Results 1 - 20 of 721 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 3' -70.1 NC_006560.1 + 1 0.68 0.247861
Target:  5'- cCCCGCGCCGCguuucccgGCGGGgCggUUCGGCGg -3'
miRNA:   3'- cGGGCGCGGCGg-------UGCCCgG--GGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 89 0.72 0.128168
Target:  5'- cCCCGCGCC-CCGCGccccGCCCCC-GCGg -3'
miRNA:   3'- cGGGCGCGGcGGUGCc---CGGGGGcCGC- -5'
31066 3' -70.1 NC_006560.1 + 165 0.7 0.173308
Target:  5'- gGCCC-CGCC-CCGCGgucccGGCCCCgcCGGCGu -3'
miRNA:   3'- -CGGGcGCGGcGGUGC-----CCGGGG--GCCGC- -5'
31066 3' -70.1 NC_006560.1 + 207 0.81 0.026971
Target:  5'- cGCgCGCGCCGCCGCGGGagggCCCGGCc -3'
miRNA:   3'- -CGgGCGCGGCGGUGCCCgg--GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 233 0.68 0.237257
Target:  5'- nCCCGCgGCuCGgUGCGGGCCCCaacugcgucuCGGUGg -3'
miRNA:   3'- cGGGCG-CG-GCgGUGCCCGGGG----------GCCGC- -5'
31066 3' -70.1 NC_006560.1 + 412 0.7 0.185572
Target:  5'- cCCCGCcCCGCCugugGGGuUCCCCGGCn -3'
miRNA:   3'- cGGGCGcGGCGGug--CCC-GGGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 440 0.72 0.134327
Target:  5'- cUCCGCgGCCuCCGCGGcCuCCCCGGCGg -3'
miRNA:   3'- cGGGCG-CGGcGGUGCCcG-GGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 502 0.7 0.181401
Target:  5'- uCUCGCucucCCGCCACGGGCgCCgGGgGg -3'
miRNA:   3'- cGGGCGc---GGCGGUGCCCGgGGgCCgC- -5'
31066 3' -70.1 NC_006560.1 + 536 0.77 0.053862
Target:  5'- gGCCgGC-CgCGCCcCGGGUCCCCGGCGu -3'
miRNA:   3'- -CGGgCGcG-GCGGuGCCCGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 601 0.68 0.251663
Target:  5'- cUCCGCGCCGCgggcaCGCGGGUucgaaucgcaaggcUCUCGGCu -3'
miRNA:   3'- cGGGCGCGGCG-----GUGCCCG--------------GGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 676 0.75 0.075764
Target:  5'- cGCCCGCGgcgcgggcUCGUCGCGGGCCCCguccccccccgCGGCc -3'
miRNA:   3'- -CGGGCGC--------GGCGGUGCCCGGGG-----------GCCGc -5'
31066 3' -70.1 NC_006560.1 + 850 0.69 0.202654
Target:  5'- cCCCGCGCgCGCC-CGcccacGGCCCCCGcccccucGCGn -3'
miRNA:   3'- cGGGCGCG-GCGGuGC-----CCGGGGGC-------CGC- -5'
31066 3' -70.1 NC_006560.1 + 888 0.77 0.059401
Target:  5'- cGCCCGCcccCCGCCG-GGGCCgCCGGCc -3'
miRNA:   3'- -CGGGCGc--GGCGGUgCCCGGgGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 1022 0.67 0.282028
Target:  5'- cGCCC-CGCCGUCuccgcccuccCGGGUaCCUGGCGc -3'
miRNA:   3'- -CGGGcGCGGCGGu---------GCCCGgGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 1090 0.72 0.134327
Target:  5'- -gCCGC-CCGCCA--GGCuCCCCGGCGg -3'
miRNA:   3'- cgGGCGcGGCGGUgcCCG-GGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 1141 0.7 0.177313
Target:  5'- gGCCCG-GCCuCCG-GGGUUCCUGGCGg -3'
miRNA:   3'- -CGGGCgCGGcGGUgCCCGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 1235 0.72 0.140758
Target:  5'- -gCCGCGCCcCCACgcagccccggcgGGGCCCCC-GCGa -3'
miRNA:   3'- cgGGCGCGGcGGUG------------CCCGGGGGcCGC- -5'
31066 3' -70.1 NC_006560.1 + 1283 0.75 0.083455
Target:  5'- aGCCCcCGCCGCgC-CGGGCCgCCCGGg- -3'
miRNA:   3'- -CGGGcGCGGCG-GuGCCCGG-GGGCCgc -5'
31066 3' -70.1 NC_006560.1 + 1330 0.71 0.147469
Target:  5'- aGCCCccggGCGCCcgacgggaccguGCgCGCGGGUCCCCcGCGg -3'
miRNA:   3'- -CGGG----CGCGG------------CG-GUGCCCGGGGGcCGC- -5'
31066 3' -70.1 NC_006560.1 + 1399 0.68 0.232099
Target:  5'- gGCCCuCGCCccCCGCGGcccucGCCCCCcGCGg -3'
miRNA:   3'- -CGGGcGCGGc-GGUGCC-----CGGGGGcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.