Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31066 | 5' | -58.1 | NC_006560.1 | + | 70736 | 1.06 | 0.002712 |
Target: 5'- gUUCGUCCGGGAGCUCCACGACACGUGg -3' miRNA: 3'- -AAGCAGGCCCUCGAGGUGCUGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 53537 | 0.77 | 0.27012 |
Target: 5'- -cCGUCCGGGcccgccccGGCUCCACGccCGCGUGc -3' miRNA: 3'- aaGCAGGCCC--------UCGAGGUGCu-GUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 48870 | 0.77 | 0.27012 |
Target: 5'- -gCGUCCGGGGGgcgcccguCUCCGCGGCGCGc- -3' miRNA: 3'- aaGCAGGCCCUC--------GAGGUGCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 43420 | 0.74 | 0.394873 |
Target: 5'- -gCGgcgCCGGGGGCgucggCgCGCGGCACGUGc -3' miRNA: 3'- aaGCa--GGCCCUCGa----G-GUGCUGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 17952 | 0.74 | 0.403281 |
Target: 5'- -cCGUCCGG-AGCUCCGCGGCGgCGc- -3' miRNA: 3'- aaGCAGGCCcUCGAGGUGCUGU-GCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 34790 | 0.72 | 0.456015 |
Target: 5'- gUCGggggCUGcGGGGUUCCGCGGCGCGg- -3' miRNA: 3'- aAGCa---GGC-CCUCGAGGUGCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 105682 | 0.72 | 0.493159 |
Target: 5'- -cCGUCCGGGAGCUC-GCGGCGa--- -3' miRNA: 3'- aaGCAGGCCCUCGAGgUGCUGUgcac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 32693 | 0.72 | 0.502662 |
Target: 5'- -cCGgggCCGGGGGCUCCGCccgagGGCGCGc- -3' miRNA: 3'- aaGCa--GGCCCUCGAGGUG-----CUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 46470 | 0.71 | 0.538477 |
Target: 5'- gUgGUCCGGGGGCUauUCGCGGCccgggaccccuagcGCGUGu -3' miRNA: 3'- aAgCAGGCCCUCGA--GGUGCUG--------------UGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 79439 | 0.71 | 0.540439 |
Target: 5'- -----gCGGGAcgaccccGCUCCGCGGCGCGUGa -3' miRNA: 3'- aagcagGCCCU-------CGAGGUGCUGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 67881 | 0.71 | 0.541421 |
Target: 5'- -aCGUCCGGGuGGCgCCGCGACcCGa- -3' miRNA: 3'- aaGCAGGCCC-UCGaGGUGCUGuGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 70835 | 0.7 | 0.601216 |
Target: 5'- --gGUCCGGGAGgUCCucGCGG-ACGUGa -3' miRNA: 3'- aagCAGGCCCUCgAGG--UGCUgUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 55839 | 0.7 | 0.611299 |
Target: 5'- gUCGcCCGGGuaguagucGGCggCCACG-CACGUGg -3' miRNA: 3'- aAGCaGGCCC--------UCGa-GGUGCuGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 106604 | 0.69 | 0.641608 |
Target: 5'- gUCGUCCGGcGGGCccuguUCUACGcCACGg- -3' miRNA: 3'- aAGCAGGCC-CUCG-----AGGUGCuGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 70581 | 0.69 | 0.651706 |
Target: 5'- gUCG-CCGGGGGCaUCCACGccCGCGc- -3' miRNA: 3'- aAGCaGGCCCUCG-AGGUGCu-GUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 108696 | 0.69 | 0.66179 |
Target: 5'- gUCGUCgaGGGGGggCCGCGACACc-- -3' miRNA: 3'- aAGCAGg-CCCUCgaGGUGCUGUGcac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 138193 | 0.69 | 0.67185 |
Target: 5'- -gCGUCCcGGGGCUgCCuGCGGCACGa- -3' miRNA: 3'- aaGCAGGcCCUCGA-GG-UGCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 93043 | 0.69 | 0.67185 |
Target: 5'- -aCGUUCGGcGGCUUCGCGGCGCa-- -3' miRNA: 3'- aaGCAGGCCcUCGAGGUGCUGUGcac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 18832 | 0.68 | 0.701807 |
Target: 5'- -gCGUCgGGcGGCUCCGCGAggcCGCGUc -3' miRNA: 3'- aaGCAGgCCcUCGAGGUGCU---GUGCAc -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 42734 | 0.68 | 0.701807 |
Target: 5'- aUCG-CCGGGGGCgugUCCgcguGCGACucCGUGg -3' miRNA: 3'- aAGCaGGCCCUCG---AGG----UGCUGu-GCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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