Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31066 | 5' | -58.1 | NC_006560.1 | + | 1986 | 0.68 | 0.71169 |
Target: 5'- cUCGgggCCGGGccAGCUCCAgGGCGgCGg- -3' miRNA: 3'- aAGCa--GGCCC--UCGAGGUgCUGU-GCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 2085 | 0.68 | 0.71169 |
Target: 5'- --gGUCCGGGGGC-CCGgcguCGGCGCGc- -3' miRNA: 3'- aagCAGGCCCUCGaGGU----GCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 3174 | 0.66 | 0.822614 |
Target: 5'- gUgGUCCGaGAGCUCgGCGACgACGc- -3' miRNA: 3'- aAgCAGGCcCUCGAGgUGCUG-UGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 11627 | 0.67 | 0.787634 |
Target: 5'- gUCGcuUCCGGGGGCUCgGCGGuC-CGg- -3' miRNA: 3'- aAGC--AGGCCCUCGAGgUGCU-GuGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 11666 | 0.67 | 0.787634 |
Target: 5'- gUCGcuUCCGGGGGCUCgGCGGuC-CGg- -3' miRNA: 3'- aAGC--AGGCCCUCGAGgUGCU-GuGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 17155 | 0.67 | 0.750474 |
Target: 5'- gUCGgaccgguacUUCGGGAGCaCCA-GGCACGUGa -3' miRNA: 3'- aAGC---------AGGCCCUCGaGGUgCUGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 17952 | 0.74 | 0.403281 |
Target: 5'- -cCGUCCGG-AGCUCCGCGGCGgCGc- -3' miRNA: 3'- aaGCAGGCCcUCGAGGUGCUGU-GCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 18121 | 0.68 | 0.71169 |
Target: 5'- -gCGUCCGGGGccGCgCCGCGGCGaaugcaGUGc -3' miRNA: 3'- aaGCAGGCCCU--CGaGGUGCUGUg-----CAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 18832 | 0.68 | 0.701807 |
Target: 5'- -gCGUCgGGcGGCUCCGCGAggcCGCGUc -3' miRNA: 3'- aaGCAGgCCcUCGAGGUGCU---GUGCAc -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 32693 | 0.72 | 0.502662 |
Target: 5'- -cCGgggCCGGGGGCUCCGCccgagGGCGCGc- -3' miRNA: 3'- aaGCa--GGCCCUCGAGGUG-----CUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 34790 | 0.72 | 0.456015 |
Target: 5'- gUCGggggCUGcGGGGUUCCGCGGCGCGg- -3' miRNA: 3'- aAGCa---GGC-CCUCGAGGUGCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 35602 | 0.66 | 0.839123 |
Target: 5'- cUCGcugCCGGGAaucCUCCGCGcCGCGg- -3' miRNA: 3'- aAGCa--GGCCCUc--GAGGUGCuGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 39403 | 0.67 | 0.740908 |
Target: 5'- cUCGggcUCGGGGGCgCCGCGGCGCc-- -3' miRNA: 3'- aAGCa--GGCCCUCGaGGUGCUGUGcac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 41290 | 0.66 | 0.839123 |
Target: 5'- -aCGUCCGGGcggucgcgcGGCUgCCcCGGC-CGUGu -3' miRNA: 3'- aaGCAGGCCC---------UCGA-GGuGCUGuGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 42734 | 0.68 | 0.701807 |
Target: 5'- aUCG-CCGGGGGCgugUCCgcguGCGACucCGUGg -3' miRNA: 3'- aAGCaGGCCCUCG---AGG----UGCUGu-GCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 43420 | 0.74 | 0.394873 |
Target: 5'- -gCGgcgCCGGGGGCgucggCgCGCGGCACGUGc -3' miRNA: 3'- aaGCa--GGCCCUCGa----G-GUGCUGUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 46470 | 0.71 | 0.538477 |
Target: 5'- gUgGUCCGGGGGCUauUCGCGGCccgggaccccuagcGCGUGu -3' miRNA: 3'- aAgCAGGCCCUCGA--GGUGCUG--------------UGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 48870 | 0.77 | 0.27012 |
Target: 5'- -gCGUCCGGGGGgcgcccguCUCCGCGGCGCGc- -3' miRNA: 3'- aaGCAGGCCCUC--------GAGGUGCUGUGCac -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 53537 | 0.77 | 0.27012 |
Target: 5'- -cCGUCCGGGcccgccccGGCUCCACGccCGCGUGc -3' miRNA: 3'- aaGCAGGCCC--------UCGAGGUGCu-GUGCAC- -5' |
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31066 | 5' | -58.1 | NC_006560.1 | + | 55839 | 0.7 | 0.611299 |
Target: 5'- gUCGcCCGGGuaguagucGGCggCCACG-CACGUGg -3' miRNA: 3'- aAGCaGGCCC--------UCGa-GGUGCuGUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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