miRNA display CGI


Results 21 - 40 of 698 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 2195 0.71 0.239287
Target:  5'- -cCGGCgCGCGCgGCCgCGCGGUccaGCgCCa -3'
miRNA:   3'- caGCCGgGCGCGgCGG-GUGCCG---UG-GG- -5'
31069 5' -66.6 NC_006560.1 + 2301 0.68 0.345839
Target:  5'- aGUCGGgC-GCGCCGgCgGCGGcCGCCUc -3'
miRNA:   3'- -CAGCCgGgCGCGGCgGgUGCC-GUGGG- -5'
31069 5' -66.6 NC_006560.1 + 2821 0.66 0.43855
Target:  5'- --gGGCCCGguccaguUGCCgGCCCagGCGGCcgugucggGCCCg -3'
miRNA:   3'- cagCCGGGC-------GCGG-CGGG--UGCCG--------UGGG- -5'
31069 5' -66.6 NC_006560.1 + 3043 0.66 0.456339
Target:  5'- --gGGCCCGaggcgcggaGCgGCCCgagggcGCGGCcggaGCCCg -3'
miRNA:   3'- cagCCGGGCg--------CGgCGGG------UGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 3252 0.77 0.092687
Target:  5'- --gGGCCCGgGCgGCgCGCGGCGCCa -3'
miRNA:   3'- cagCCGGGCgCGgCGgGUGCCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 3548 0.67 0.390791
Target:  5'- gGUCGGCggCgGCGgCGCCgACGgagcGCACCUg -3'
miRNA:   3'- -CAGCCG--GgCGCgGCGGgUGC----CGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 3602 0.69 0.27945
Target:  5'- -gCGGCgcggCgGCGCCggcgacgagGCCCACGGCGCgCa -3'
miRNA:   3'- caGCCG----GgCGCGG---------CGGGUGCCGUGgG- -5'
31069 5' -66.6 NC_006560.1 + 3652 0.68 0.353068
Target:  5'- -gCGGCCUcgGCGCCGCCggggaCGCGGagguCGCCg -3'
miRNA:   3'- caGCCGGG--CGCGGCGG-----GUGCC----GUGGg -5'
31069 5' -66.6 NC_006560.1 + 3766 0.74 0.140096
Target:  5'- -gCGGCgCCGCGCgGCgggaCCGCGGCGCgCg -3'
miRNA:   3'- caGCCG-GGCGCGgCG----GGUGCCGUGgG- -5'
31069 5' -66.6 NC_006560.1 + 3975 0.78 0.072183
Target:  5'- -gCGGCgCUGCGCggcgacaCGCCCGCGGCGCCg -3'
miRNA:   3'- caGCCG-GGCGCG-------GCGGGUGCCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 4048 0.72 0.177536
Target:  5'- -gCGGCgCgGCGCCGgCCGCGGCGgCg -3'
miRNA:   3'- caGCCG-GgCGCGGCgGGUGCCGUgGg -5'
31069 5' -66.6 NC_006560.1 + 4206 0.66 0.456339
Target:  5'- -gCGGCCaugGCGuaGCCCagguGCGGCACg- -3'
miRNA:   3'- caGCCGGg--CGCggCGGG----UGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 4403 0.7 0.267454
Target:  5'- -cUGGCgcgCgGCGUCGCCCAgcucgGGCGCCCa -3'
miRNA:   3'- caGCCG---GgCGCGGCGGGUg----CCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 4559 0.66 0.47189
Target:  5'- cUCGGCCCcgggccagggcuCGCCGCUgGCGuaGCCg -3'
miRNA:   3'- cAGCCGGGc-----------GCGGCGGgUGCcgUGGg -5'
31069 5' -66.6 NC_006560.1 + 4654 0.66 0.422803
Target:  5'- -gCGGCCgCGCgGCCgugaagcgGCCCGUGGCgucgcGCCCg -3'
miRNA:   3'- caGCCGG-GCG-CGG--------CGGGUGCCG-----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 4701 0.71 0.218078
Target:  5'- -gCGGCgCGCGCgcggcggCGCUCGCuGCGCCCg -3'
miRNA:   3'- caGCCGgGCGCG-------GCGGGUGcCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 4755 0.73 0.154117
Target:  5'- -gCGGCCCGCGgCGgCgGCGGCGCg- -3'
miRNA:   3'- caGCCGGGCGCgGCgGgUGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 5084 0.69 0.300172
Target:  5'- -cCGGCgugcggCGCGCCGCCCggggucggcgggggcGCGGCgucgaugACCCa -3'
miRNA:   3'- caGCCGg-----GCGCGGCGGG---------------UGCCG-------UGGG- -5'
31069 5' -66.6 NC_006560.1 + 5160 0.67 0.405799
Target:  5'- --gGGCCgGgGCCGCgggggcgggCCGCGGCgacggcgGCCCc -3'
miRNA:   3'- cagCCGGgCgCGGCG---------GGUGCCG-------UGGG- -5'
31069 5' -66.6 NC_006560.1 + 5213 0.67 0.383038
Target:  5'- --aGcGCCCGgGCCGUcuccuccaCCAUGGCGgCCa -3'
miRNA:   3'- cagC-CGGGCgCGGCG--------GGUGCCGUgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.