miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 93 0.67 0.390791
Target:  5'- -gCGcCCCGCGCCccgccCCCGCGGCcgcgGCCg -3'
miRNA:   3'- caGCcGGGCGCGGc----GGGUGCCG----UGGg -5'
31069 5' -66.6 NC_006560.1 + 141 0.7 0.273399
Target:  5'- --gGGCCgGCcCCGcCCCGCGGUcccgGCCCc -3'
miRNA:   3'- cagCCGGgCGcGGC-GGGUGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 182 0.68 0.338717
Target:  5'- -cCGGCCC-CGCCGgcguuuuuuUCCGCGcGCGCgCCg -3'
miRNA:   3'- caGCCGGGcGCGGC---------GGGUGC-CGUG-GG- -5'
31069 5' -66.6 NC_006560.1 + 435 0.68 0.324794
Target:  5'- -cCGGCCUcCGCgGCCUccGCGGCcucCCCg -3'
miRNA:   3'- caGCCGGGcGCGgCGGG--UGCCGu--GGG- -5'
31069 5' -66.6 NC_006560.1 + 496 0.66 0.439388
Target:  5'- cGUCGGUCuCGCucucCCGCCaCG-GGCGCCg -3'
miRNA:   3'- -CAGCCGG-GCGc---GGCGG-GUgCCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 534 0.68 0.367843
Target:  5'- -gCGGCCggcCGCGCCccggGUCCcCGGCGuCCCc -3'
miRNA:   3'- caGCCGG---GCGCGG----CGGGuGCCGU-GGG- -5'
31069 5' -66.6 NC_006560.1 + 651 0.72 0.187759
Target:  5'- -aCGGCCCcagguucgcaccccgGCG-CGCCCGCGGCGCg- -3'
miRNA:   3'- caGCCGGG---------------CGCgGCGGGUGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 716 0.72 0.204064
Target:  5'- -gCGGCCC-CGUCcccCCCGCGGC-CCCg -3'
miRNA:   3'- caGCCGGGcGCGGc--GGGUGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 751 0.66 0.473635
Target:  5'- -gCGGCCC-CGUCcccccccCCCGCGGCGCg- -3'
miRNA:   3'- caGCCGGGcGCGGc------GGGUGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 847 0.8 0.052263
Target:  5'- --aGGCCCcgcgcGCGcCCGCCCACGGCcCCCg -3'
miRNA:   3'- cagCCGGG-----CGC-GGCGGGUGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 885 0.66 0.464945
Target:  5'- -gCGcGCCCGCcccccgccgggGCCGCCgGCcGCuCCCg -3'
miRNA:   3'- caGC-CGGGCG-----------CGGCGGgUGcCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 1069 0.66 0.43855
Target:  5'- -gCGG-CCGCcgacggggcagaaGCCGCCCGCcaGGCucCCCg -3'
miRNA:   3'- caGCCgGGCG-------------CGGCGGGUG--CCGu-GGG- -5'
31069 5' -66.6 NC_006560.1 + 1227 0.67 0.383038
Target:  5'- --gGGCCCcugccGCGCCcccacgcaGCCCcgGCGGgGCCCc -3'
miRNA:   3'- cagCCGGG-----CGCGG--------CGGG--UGCCgUGGG- -5'
31069 5' -66.6 NC_006560.1 + 1296 0.68 0.324794
Target:  5'- -cCGGgCCGCccggguuCCGCCCgcACGGCuCCCg -3'
miRNA:   3'- caGCCgGGCGc------GGCGGG--UGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 1362 0.72 0.199415
Target:  5'- --gGGuCCCcCGCgGCCCgcACGGCGCCCc -3'
miRNA:   3'- cagCC-GGGcGCGgCGGG--UGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 1397 0.76 0.094995
Target:  5'- -gCGGCCCuCGCCcCCCGCGGCccucGCCCc -3'
miRNA:   3'- caGCCGGGcGCGGcGGGUGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 1429 0.73 0.173424
Target:  5'- -gCGGCCCuCGCCcCCCuccCGGCACCg -3'
miRNA:   3'- caGCCGGGcGCGGcGGGu--GCCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 1465 0.71 0.23396
Target:  5'- -gCGGCCCGUGCgcgCGCCCcaucggagGCGcGCgGCCCa -3'
miRNA:   3'- caGCCGGGCGCG---GCGGG--------UGC-CG-UGGG- -5'
31069 5' -66.6 NC_006560.1 + 1608 0.67 0.383038
Target:  5'- -gCGGCCgGCGCgCGCuCUGCGggcuucGCGCCUg -3'
miRNA:   3'- caGCCGGgCGCG-GCG-GGUGC------CGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 2054 0.68 0.322743
Target:  5'- -gCGGCCCaGCGCaCGCgcggCGCGGCggcgggguccggggGCCCg -3'
miRNA:   3'- caGCCGGG-CGCG-GCGg---GUGCCG--------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.