miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 67507 1.1 0.00029
Target:  5'- aGUCGGCCCGCGCCGCCCACGGCACCCa -3'
miRNA:   3'- -CAGCCGGGCGCGGCGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 144057 0.9 0.008981
Target:  5'- -gCGGCCCGCgGCCGCCCcCGGCGCCCc -3'
miRNA:   3'- caGCCGGGCG-CGGCGGGuGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 29021 0.9 0.009702
Target:  5'- -cCGGCCCcgGgGCCGCCCACGGCGCCCc -3'
miRNA:   3'- caGCCGGG--CgCGGCGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 26852 0.83 0.031505
Target:  5'- -gCGGCCgGcCGCCGCCCccCGGCGCCCg -3'
miRNA:   3'- caGCCGGgC-GCGGCGGGu-GCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 27687 0.83 0.033148
Target:  5'- cGUCGGUCggggUGCGCCGCCCGCGGU-CCCg -3'
miRNA:   3'- -CAGCCGG----GCGCGGCGGGUGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 28924 0.82 0.034787
Target:  5'- -cCGGCCCGC-CCGCCCccucaacAUGGCGCCCg -3'
miRNA:   3'- caGCCGGGCGcGGCGGG-------UGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 57625 0.82 0.034787
Target:  5'- -aCGG-CCGCGCCGCCCGCGaccgggcGCACCCg -3'
miRNA:   3'- caGCCgGGCGCGGCGGGUGC-------CGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 117789 0.82 0.036691
Target:  5'- cGUC-GCCUGCGaCGCCCGCGGCGCCUa -3'
miRNA:   3'- -CAGcCGGGCGCgGCGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 27439 0.82 0.0386
Target:  5'- uUCGcGUCCGCGuCCuCCCGCGGCGCCCg -3'
miRNA:   3'- cAGC-CGGGCGC-GGcGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 24055 0.81 0.040605
Target:  5'- ---cGCCCGCGCCcccgGCCCGCGGCGCUCa -3'
miRNA:   3'- cagcCGGGCGCGG----CGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 78940 0.81 0.042713
Target:  5'- --aGGCgCGCuuuccguucGCCGCCCGCGGCGCCCc -3'
miRNA:   3'- cagCCGgGCG---------CGGCGGGUGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 108603 0.81 0.043806
Target:  5'- cUUGGCgCCGCGCgCGCCCGCGaGCgACCCg -3'
miRNA:   3'- cAGCCG-GGCGCG-GCGGGUGC-CG-UGGG- -5'
31069 5' -66.6 NC_006560.1 + 23994 0.81 0.044927
Target:  5'- -cCGGCCCGCGcCCGCCCGCc-CGCCCg -3'
miRNA:   3'- caGCCGGGCGC-GGCGGGUGccGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 84433 0.81 0.047253
Target:  5'- --gGGCCgGCGCucCGCCCACGGCcGCCCg -3'
miRNA:   3'- cagCCGGgCGCG--GCGGGUGCCG-UGGG- -5'
31069 5' -66.6 NC_006560.1 + 134223 0.8 0.049697
Target:  5'- gGUCGGcCCCGC-CCGCCgCGCGGCccGCCCc -3'
miRNA:   3'- -CAGCC-GGGCGcGGCGG-GUGCCG--UGGG- -5'
31069 5' -66.6 NC_006560.1 + 847 0.8 0.052263
Target:  5'- --aGGCCCcgcgcGCGcCCGCCCACGGCcCCCg -3'
miRNA:   3'- cagCCGGG-----CGC-GGCGGGUGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 117567 0.8 0.055933
Target:  5'- -gCGGCgCCGcCGCCGCCCGCGacccgccuccgcccGCGCCCg -3'
miRNA:   3'- caGCCG-GGC-GCGGCGGGUGC--------------CGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 33323 0.79 0.059255
Target:  5'- -cCGGCCCGCggacGCCGCCCcugccgccGCGGC-CCCg -3'
miRNA:   3'- caGCCGGGCG----CGGCGGG--------UGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 72808 0.79 0.060759
Target:  5'- -cCGGCCC-CGCCGCCggaACGGCAgCCCg -3'
miRNA:   3'- caGCCGGGcGCGGCGGg--UGCCGU-GGG- -5'
31069 5' -66.6 NC_006560.1 + 28221 0.79 0.065493
Target:  5'- cGUCGGCCCGgGCCGCCgGCcGuCugCCg -3'
miRNA:   3'- -CAGCCGGGCgCGGCGGgUGcC-GugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.