miRNA display CGI


Results 1 - 20 of 284 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31079 3' -66 NC_006560.1 + 63589 1.12 0.000233
Target:  5'- aGGGGCUGCCGGUGGUGGCCGCGGCGCg -3'
miRNA:   3'- -CCCCGACGGCCACCACCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 34602 0.83 0.032607
Target:  5'- gGGGGCU-CCGGggGGUGGCCGCgcggcucgggGGCGCg -3'
miRNA:   3'- -CCCCGAcGGCCa-CCACCGGCG----------CCGCG- -5'
31079 3' -66 NC_006560.1 + 75996 0.82 0.038974
Target:  5'- gGGGGCgUGCCGcUGGaccUGGCCGCGGcCGCg -3'
miRNA:   3'- -CCCCG-ACGGCcACC---ACCGGCGCC-GCG- -5'
31079 3' -66 NC_006560.1 + 83193 0.81 0.044252
Target:  5'- cGGGGCUGCCGG-GGcUGcCCGgGGCGCc -3'
miRNA:   3'- -CCCCGACGGCCaCC-ACcGGCgCCGCG- -5'
31079 3' -66 NC_006560.1 + 5152 0.81 0.046553
Target:  5'- cGGGGCccggGCCGGggccgcgGGggcgGGCCGCGGCGa -3'
miRNA:   3'- -CCCCGa---CGGCCa------CCa---CCGGCGCCGCg -5'
31079 3' -66 NC_006560.1 + 130305 0.81 0.050226
Target:  5'- -cGGCcGCCGGcgcGGUGGCgGCGGCGCg -3'
miRNA:   3'- ccCCGaCGGCCa--CCACCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 55330 0.8 0.06145
Target:  5'- cGGGGCggggGCUcGUGGcGGCCGUGGUGCu -3'
miRNA:   3'- -CCCCGa---CGGcCACCaCCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 33641 0.79 0.066256
Target:  5'- gGGGGC-GCCGGgGGcGGCCGCGGgcCGCu -3'
miRNA:   3'- -CCCCGaCGGCCaCCaCCGGCGCC--GCG- -5'
31079 3' -66 NC_006560.1 + 78065 0.79 0.066256
Target:  5'- -uGGCgGCCGGcGGcgcGGCCGCGGCGCu -3'
miRNA:   3'- ccCCGaCGGCCaCCa--CCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 17216 0.79 0.067938
Target:  5'- aGGGCcaggacGCCGG-GGUGGCUcagGCGGCGCa -3'
miRNA:   3'- cCCCGa-----CGGCCaCCACCGG---CGCCGCG- -5'
31079 3' -66 NC_006560.1 + 39942 0.79 0.06966
Target:  5'- uGGGGCccGUCGGUaGGcggGGCgGCGGCGCg -3'
miRNA:   3'- -CCCCGa-CGGCCA-CCa--CCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 131382 0.79 0.071424
Target:  5'- gGGGGCgcggUGCUGGcgGGcgcUGGCCGCGGaCGCg -3'
miRNA:   3'- -CCCCG----ACGGCCa-CC---ACCGGCGCC-GCG- -5'
31079 3' -66 NC_006560.1 + 133959 0.78 0.075082
Target:  5'- gGGGGUcGUCGGg---GGCCGCGGCGCc -3'
miRNA:   3'- -CCCCGaCGGCCaccaCCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 28417 0.78 0.082944
Target:  5'- cGGGGCggGCCGG-GGcgGGCCGagggggaGGCGCc -3'
miRNA:   3'- -CCCCGa-CGGCCaCCa-CCGGCg------CCGCG- -5'
31079 3' -66 NC_006560.1 + 142056 0.78 0.083772
Target:  5'- cGGGGaaccuccgcgcacccCgagGCCGGgcgGGcggGGCCGCGGCGCg -3'
miRNA:   3'- -CCCC---------------Ga--CGGCCa--CCa--CCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 33820 0.77 0.087164
Target:  5'- gGGGGCggggGUCGGcgggGGUcGGCCGCgGGCGUg -3'
miRNA:   3'- -CCCCGa---CGGCCa---CCA-CCGGCG-CCGCG- -5'
31079 3' -66 NC_006560.1 + 130516 0.76 0.101081
Target:  5'- -cGGCgGCCGGccGGUGGCgccgCGCGGCGCc -3'
miRNA:   3'- ccCCGaCGGCCa-CCACCG----GCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 5672 0.76 0.103596
Target:  5'- cGGGGC-GCgGG-GGcGGCCgGCGGCGCc -3'
miRNA:   3'- -CCCCGaCGgCCaCCaCCGG-CGCCGCG- -5'
31079 3' -66 NC_006560.1 + 33190 0.76 0.106169
Target:  5'- aGGGGCccGCgGGgaaGGcGGCCGCGGgGCa -3'
miRNA:   3'- -CCCCGa-CGgCCa--CCaCCGGCGCCgCG- -5'
31079 3' -66 NC_006560.1 + 62427 0.76 0.106169
Target:  5'- cGGGGCgggaGCgaGGuUGGggcgagagcggGGCCGCGGCGCg -3'
miRNA:   3'- -CCCCGa---CGg-CC-ACCa----------CCGGCGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.