miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31079 3' -66 NC_006560.1 + 518 0.7 0.265654
Target:  5'- cGGGC-GCCGG-GG-GGCgGCGGCcgGCc -3'
miRNA:   3'- cCCCGaCGGCCaCCaCCGgCGCCG--CG- -5'
31079 3' -66 NC_006560.1 + 1627 0.69 0.32985
Target:  5'- cGGGCUucgcGCCugucuGUGGcggGGCCGgGGCGUc -3'
miRNA:   3'- cCCCGA----CGGc----CACCa--CCGGCgCCGCG- -5'
31079 3' -66 NC_006560.1 + 1873 0.72 0.197774
Target:  5'- gGGGGUcGCgGGcgGGggucgcgGGCgGCGGCGCc -3'
miRNA:   3'- -CCCCGaCGgCCa-CCa------CCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 1981 0.72 0.218873
Target:  5'- cGGGGCUcgggGCCGGgccagcuccagGGCgGCGGCGUc -3'
miRNA:   3'- -CCCCGA----CGGCCacca-------CCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 2304 0.73 0.163941
Target:  5'- cGGGCgcGCCGGcGGcGGCCGCcucGCGCg -3'
miRNA:   3'- cCCCGa-CGGCCaCCaCCGGCGc--CGCG- -5'
31079 3' -66 NC_006560.1 + 2334 0.68 0.373547
Target:  5'- cGGGCgaGUCGGcGGcgcGGCCGuCGaGCGCg -3'
miRNA:   3'- cCCCGa-CGGCCaCCa--CCGGC-GC-CGCG- -5'
31079 3' -66 NC_006560.1 + 2705 0.67 0.412848
Target:  5'- aGGcGGCgGCCGGcGGcGGCCGCca-GCa -3'
miRNA:   3'- -CC-CCGaCGGCCaCCaCCGGCGccgCG- -5'
31079 3' -66 NC_006560.1 + 3067 0.73 0.175973
Target:  5'- aGGGCgcgGCCGGagcccggcucgGGcgGGCCGCaGCGCg -3'
miRNA:   3'- cCCCGa--CGGCCa----------CCa-CCGGCGcCGCG- -5'
31079 3' -66 NC_006560.1 + 3233 0.72 0.197774
Target:  5'- cGGGCgGCggCGuGUGGgcgGGCCcggGCGGCGCg -3'
miRNA:   3'- cCCCGaCG--GC-CACCa--CCGG---CGCCGCG- -5'
31079 3' -66 NC_006560.1 + 3290 0.7 0.296404
Target:  5'- cGGGCccGCCGGgcgGGcgGGCgGUGaGCGCc -3'
miRNA:   3'- cCCCGa-CGGCCa--CCa-CCGgCGC-CGCG- -5'
31079 3' -66 NC_006560.1 + 3395 0.68 0.389742
Target:  5'- cGGGCcggcucuucuugcgcGCCGGcGGgcgGGCgGCGGgCGCg -3'
miRNA:   3'- cCCCGa--------------CGGCCaCCa--CCGgCGCC-GCG- -5'
31079 3' -66 NC_006560.1 + 3518 0.68 0.358554
Target:  5'- gGGGGCgcagGCUcuGGUuccggaagagcaGGUcggcGGCgGCGGCGCc -3'
miRNA:   3'- -CCCCGa---CGG--CCA------------CCA----CCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 3585 0.67 0.42101
Target:  5'- cGGGCUGCgGGccagcagcGGc-GCgGCGGCGCc -3'
miRNA:   3'- cCCCGACGgCCa-------CCacCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 3764 0.72 0.202408
Target:  5'- cGGcGGC-GCCGcGcGGcgGGaCCGCGGCGCg -3'
miRNA:   3'- -CC-CCGaCGGC-CaCCa-CC-GGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 3936 0.69 0.32985
Target:  5'- gGGGGCggcgccgcgGUCGGcggcgagGGcGGCCGCcaggcGGCGCu -3'
miRNA:   3'- -CCCCGa--------CGGCCa------CCaCCGGCG-----CCGCG- -5'
31079 3' -66 NC_006560.1 + 4012 0.73 0.175973
Target:  5'- -cGGCgagGCCGGgGGcGGCgGCGGCGUc -3'
miRNA:   3'- ccCCGa--CGGCCaCCaCCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 4041 0.74 0.152654
Target:  5'- cGGGGCggcgGCgCGGcGccGGCCGCGGCGg -3'
miRNA:   3'- -CCCCGa---CG-GCCaCcaCCGGCGCCGCg -5'
31079 3' -66 NC_006560.1 + 4554 0.66 0.454601
Target:  5'- gGGGGCUcggccCCGGgccaGGgcucGCCGCuGGCGUa -3'
miRNA:   3'- -CCCCGAc----GGCCa---CCac--CGGCG-CCGCG- -5'
31079 3' -66 NC_006560.1 + 4750 0.71 0.248475
Target:  5'- cGGcGGCgGCCcGcGGcGGCgGCGGCGCg -3'
miRNA:   3'- -CC-CCGaCGGcCaCCaCCGgCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 4882 0.74 0.145526
Target:  5'- cGGcGGCggcGCCGGcGGgGGCCGCGucGCGCu -3'
miRNA:   3'- -CC-CCGa--CGGCCaCCaCCGGCGC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.