miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 3' -56.2 NC_006560.1 + 125607 0.68 0.820021
Target:  5'- cGUCGAcgccGCgGUCUacgaccUGAuCCGCCGCAa -3'
miRNA:   3'- -CAGCUuc--CGgCAGA------ACUuGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 84799 0.68 0.820021
Target:  5'- cUCGcuGGCUGUgCUggcGGACCGCCaGCAc -3'
miRNA:   3'- cAGCuuCCGGCA-GAa--CUUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 107021 0.68 0.811343
Target:  5'- -gCGAGGGcCCGUCgcacaacgcgGAGCCGCuCGUc -3'
miRNA:   3'- caGCUUCC-GGCAGaa--------CUUGGCG-GCGu -5'
31080 3' -56.2 NC_006560.1 + 4507 0.68 0.802502
Target:  5'- -cCGGGcGGCUGUCgcccaGGCCGCCGUAg -3'
miRNA:   3'- caGCUU-CCGGCAGaac--UUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 103048 0.68 0.802502
Target:  5'- -gCGGGcGGCCGcUCggGGGCCGCCGg- -3'
miRNA:   3'- caGCUU-CCGGC-AGaaCUUGGCGGCgu -5'
31080 3' -56.2 NC_006560.1 + 106028 0.68 0.802502
Target:  5'- uUCGuccucGGGuCCGUCgUGGACCcCCGCAa -3'
miRNA:   3'- cAGCu----UCC-GGCAGaACUUGGcGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 98187 0.68 0.793506
Target:  5'- uUCGAGGGCC-UCggggacgUGGGCCG-CGCGg -3'
miRNA:   3'- cAGCUUCCGGcAGa------ACUUGGCgGCGU- -5'
31080 3' -56.2 NC_006560.1 + 28233 0.69 0.775086
Target:  5'- -cCGccGGCCGUCU---GCCGCCuGCGa -3'
miRNA:   3'- caGCuuCCGGCAGAacuUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 8727 0.69 0.775086
Target:  5'- aGUCGgcGGCCGUCUcG--UCGUCGCu -3'
miRNA:   3'- -CAGCuuCCGGCAGAaCuuGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 106436 0.69 0.76568
Target:  5'- -gCGGAGGCgGUCgcgGGcgACCGCCGg- -3'
miRNA:   3'- caGCUUCCGgCAGaa-CU--UGGCGGCgu -5'
31080 3' -56.2 NC_006560.1 + 95090 0.69 0.76568
Target:  5'- cGUCGcGGGCCGg-----GCCGCCGCc -3'
miRNA:   3'- -CAGCuUCCGGCagaacuUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 53983 0.69 0.76568
Target:  5'- --aGGAGGCCGgg--GAGCCGCC-CAu -3'
miRNA:   3'- cagCUUCCGGCagaaCUUGGCGGcGU- -5'
31080 3' -56.2 NC_006560.1 + 32938 0.69 0.76568
Target:  5'- --aGggGGCCGUC----GCCGCCgGCGg -3'
miRNA:   3'- cagCuuCCGGCAGaacuUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 5286 0.69 0.74652
Target:  5'- gGUCGGcgucGGcGUCGUCgucGGCCGCCGCGu -3'
miRNA:   3'- -CAGCU----UC-CGGCAGaacUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 66132 0.69 0.726958
Target:  5'- cUCGAGGGCCGaCUccAGCCcCCGCGg -3'
miRNA:   3'- cAGCUUCCGGCaGAacUUGGcGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 82183 0.7 0.707068
Target:  5'- gGUCGAGGaaGCgGUUgauGACCGCCGCGa -3'
miRNA:   3'- -CAGCUUC--CGgCAGaacUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 51369 0.7 0.707068
Target:  5'- -aCGGAGGCCG------GCCGCCGCGc -3'
miRNA:   3'- caGCUUCCGGCagaacuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 76865 0.7 0.686924
Target:  5'- -gCGggGGCCGUCgagGAgaugggcgugGCCGuuGCc -3'
miRNA:   3'- caGCuuCCGGCAGaa-CU----------UGGCggCGu -5'
31080 3' -56.2 NC_006560.1 + 18833 0.7 0.676779
Target:  5'- cGUCGGgcggcuccgcgAGGCCGcgucucgccUCUgggcgGGGCCGCCGCc -3'
miRNA:   3'- -CAGCU-----------UCCGGC---------AGAa----CUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 96951 0.7 0.666598
Target:  5'- cUCGAcGGGCCGcCgc--GCCGCCGCGc -3'
miRNA:   3'- cAGCU-UCCGGCaGaacuUGGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.