miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 3' -56.2 NC_006560.1 + 62726 1.09 0.002834
Target:  5'- aGUCGAAGGCCGUCUUGAACCGCCGCAg -3'
miRNA:   3'- -CAGCUUCCGGCAGAACUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 133957 0.77 0.317017
Target:  5'- -cCGggGGUCGUCggGGGCCGCgGCGc -3'
miRNA:   3'- caGCuuCCGGCAGaaCUUGGCGgCGU- -5'
31080 3' -56.2 NC_006560.1 + 107996 0.75 0.404244
Target:  5'- cGUCGGccGGGUCGUCgccgcgcUGcGCCGCCGCGa -3'
miRNA:   3'- -CAGCU--UCCGGCAGa------ACuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 90550 0.74 0.464281
Target:  5'- cUCGAAucgcucauguccauGGCCGUCUUugacGAGCCGCCGaCGg -3'
miRNA:   3'- cAGCUU--------------CCGGCAGAA----CUUGGCGGC-GU- -5'
31080 3' -56.2 NC_006560.1 + 70888 0.74 0.485945
Target:  5'- --gGAGGGCCGcuccguccUCacGAGCCGCCGCGa -3'
miRNA:   3'- cagCUUCCGGC--------AGaaCUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 72466 0.72 0.554529
Target:  5'- -aUGGAGGUCGUCUcgccGCUGCCGCAc -3'
miRNA:   3'- caGCUUCCGGCAGAacu-UGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 58239 0.72 0.554529
Target:  5'- -aCGggGGCCGg---GGGCCGCCGa- -3'
miRNA:   3'- caGCuuCCGGCagaaCUUGGCGGCgu -5'
31080 3' -56.2 NC_006560.1 + 10291 0.72 0.574687
Target:  5'- -gCGAgagggggcGGGCCGcCggGGACCGCCGCc -3'
miRNA:   3'- caGCU--------UCCGGCaGaaCUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 59004 0.72 0.595009
Target:  5'- uGUCGAugcggaccGGGCCGgcgCgcuGGCCGCCGCGc -3'
miRNA:   3'- -CAGCU--------UCCGGCa--GaacUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 7647 0.71 0.615439
Target:  5'- cGUCGggGcGaCCGUCgccccucUGGGCCGgCCGCGc -3'
miRNA:   3'- -CAGCuuC-C-GGCAGa------ACUUGGC-GGCGU- -5'
31080 3' -56.2 NC_006560.1 + 90292 0.71 0.625677
Target:  5'- uUCG-AGGCCGUCgugGGGcCCGUCGCc -3'
miRNA:   3'- cAGCuUCCGGCAGaa-CUU-GGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 122657 0.71 0.656389
Target:  5'- --gGggGGCCG-CU--GACCGCCGCc -3'
miRNA:   3'- cagCuuCCGGCaGAacUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 96951 0.7 0.666598
Target:  5'- cUCGAcGGGCCGcCgc--GCCGCCGCGc -3'
miRNA:   3'- cAGCU-UCCGGCaGaacuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 133174 0.7 0.666598
Target:  5'- cUCGGAGGCggugagggCGUCcgcgGGGCCGCCGUc -3'
miRNA:   3'- cAGCUUCCG--------GCAGaa--CUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 18833 0.7 0.676779
Target:  5'- cGUCGGgcggcuccgcgAGGCCGcgucucgccUCUgggcgGGGCCGCCGCc -3'
miRNA:   3'- -CAGCU-----------UCCGGC---------AGAa----CUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 76865 0.7 0.686924
Target:  5'- -gCGggGGCCGUCgagGAgaugggcgugGCCGuuGCc -3'
miRNA:   3'- caGCuuCCGGCAGaa-CU----------UGGCggCGu -5'
31080 3' -56.2 NC_006560.1 + 82183 0.7 0.707068
Target:  5'- gGUCGAGGaaGCgGUUgauGACCGCCGCGa -3'
miRNA:   3'- -CAGCUUC--CGgCAGaacUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 51369 0.7 0.707068
Target:  5'- -aCGGAGGCCG------GCCGCCGCGc -3'
miRNA:   3'- caGCUUCCGGCagaacuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 66132 0.69 0.726958
Target:  5'- cUCGAGGGCCGaCUccAGCCcCCGCGg -3'
miRNA:   3'- cAGCUUCCGGCaGAacUUGGcGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 5286 0.69 0.74652
Target:  5'- gGUCGGcgucGGcGUCGUCgucGGCCGCCGCGu -3'
miRNA:   3'- -CAGCU----UC-CGGCAGaacUUGGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.