miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 3' -56.2 NC_006560.1 + 1007 0.67 0.860694
Target:  5'- -cCGggGcGCCGUCUccgccCCGCCGUc -3'
miRNA:   3'- caGCuuC-CGGCAGAacuu-GGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 4507 0.68 0.802502
Target:  5'- -cCGGGcGGCUGUCgcccaGGCCGCCGUAg -3'
miRNA:   3'- caGCUU-CCGGCAGaac--UUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 5286 0.69 0.74652
Target:  5'- gGUCGGcgucGGcGUCGUCgucGGCCGCCGCGu -3'
miRNA:   3'- -CAGCU----UC-CGGCAGaacUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 6097 0.67 0.868235
Target:  5'- cGUCGAGGgcGCCG-Cgcc-GCCGCCGCc -3'
miRNA:   3'- -CAGCUUC--CGGCaGaacuUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 7647 0.71 0.615439
Target:  5'- cGUCGggGcGaCCGUCgccccucUGGGCCGgCCGCGc -3'
miRNA:   3'- -CAGCuuC-C-GGCAGa------ACUUGGC-GGCGU- -5'
31080 3' -56.2 NC_006560.1 + 8727 0.69 0.775086
Target:  5'- aGUCGgcGGCCGUCUcG--UCGUCGCu -3'
miRNA:   3'- -CAGCuuCCGGCAGAaCuuGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 10291 0.72 0.574687
Target:  5'- -gCGAgagggggcGGGCCGcCggGGACCGCCGCc -3'
miRNA:   3'- caGCU--------UCCGGCaGaaCUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 13038 0.66 0.889562
Target:  5'- -gCGGcAGGCCGUCgggggGAugCGCaGCGg -3'
miRNA:   3'- caGCU-UCCGGCAGaa---CUugGCGgCGU- -5'
31080 3' -56.2 NC_006560.1 + 15271 0.67 0.828528
Target:  5'- -cCGggGGCgCgGUCgcggGAGCCGgCGCGg -3'
miRNA:   3'- caGCuuCCG-G-CAGaa--CUUGGCgGCGU- -5'
31080 3' -56.2 NC_006560.1 + 18833 0.7 0.676779
Target:  5'- cGUCGGgcggcuccgcgAGGCCGcgucucgccUCUgggcgGGGCCGCCGCc -3'
miRNA:   3'- -CAGCU-----------UCCGGC---------AGAa----CUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 23551 0.66 0.882674
Target:  5'- cGUCGAGGGCUucggCggcGAccucGCCGCCGUg -3'
miRNA:   3'- -CAGCUUCCGGca--Gaa-CU----UGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 23763 0.67 0.868235
Target:  5'- -cCGuGGGCCucGUCgccgGcGCCGCCGCGc -3'
miRNA:   3'- caGCuUCCGG--CAGaa--CuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 24648 0.66 0.896223
Target:  5'- cGUCGAguuccuGGGCCuG-CUggcGGCCGCCGCc -3'
miRNA:   3'- -CAGCU------UCCGG-CaGAac-UUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 25957 0.66 0.889562
Target:  5'- -gCGAGGGCCG-CgggGGGCgaggGCCGCGg -3'
miRNA:   3'- caGCUUCCGGCaGaa-CUUGg---CGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 27666 0.67 0.844998
Target:  5'- -gCGGAGGUCGUCcucgcCCGCCGUc -3'
miRNA:   3'- caGCUUCCGGCAGaacuuGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 28233 0.69 0.775086
Target:  5'- -cCGccGGCCGUCU---GCCGCCuGCGa -3'
miRNA:   3'- caGCuuCCGGCAGAacuUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 31738 0.67 0.844998
Target:  5'- uUCGAgcaGGGCgCG-CUgcUGGGCgGCCGCAg -3'
miRNA:   3'- cAGCU---UCCG-GCaGA--ACUUGgCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 32938 0.69 0.76568
Target:  5'- --aGggGGCCGUC----GCCGCCgGCGg -3'
miRNA:   3'- cagCuuCCGGCAGaacuUGGCGG-CGU- -5'
31080 3' -56.2 NC_006560.1 + 33638 0.66 0.889562
Target:  5'- -gCGggGGgCGcCggGGGCgGCCGCGg -3'
miRNA:   3'- caGCuuCCgGCaGaaCUUGgCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 34789 0.66 0.889562
Target:  5'- uGUCGggGGCUG-CggGGuuCCGCgGCGc -3'
miRNA:   3'- -CAGCuuCCGGCaGaaCUu-GGCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.