miRNA display CGI


Results 1 - 20 of 547 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 5' -65.6 NC_006560.1 + 62760 1.07 0.000578
Target:  5'- gUCCGCGGCGAGGCACGGCAGCGCCCGc -3'
miRNA:   3'- -AGGCGCCGCUCCGUGCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 146844 0.86 0.022054
Target:  5'- gCUGCGGCGgcgcgGGGCGgGGCGGCGCCCGg -3'
miRNA:   3'- aGGCGCCGC-----UCCGUgCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 3750 0.86 0.022054
Target:  5'- -gCGCGGCGcGGGCGCGGCGGCGCCgCGc -3'
miRNA:   3'- agGCGCCGC-UCCGUGCCGUCGCGG-GC- -5'
31080 5' -65.6 NC_006560.1 + 117976 0.85 0.025088
Target:  5'- -gUGUGGCGccuGGGCGCGGCGGCGCCCGc -3'
miRNA:   3'- agGCGCCGC---UCCGUGCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 5181 0.83 0.034948
Target:  5'- gCCGCGGCGAcggcggccccgacGGCGgGGaCAGCGCCCGg -3'
miRNA:   3'- aGGCGCCGCU-------------CCGUgCC-GUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 16302 0.83 0.035946
Target:  5'- -gCGCGGCGGGGCGCgGGCccGCGCCCGc -3'
miRNA:   3'- agGCGCCGCUCCGUG-CCGu-CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 138398 0.82 0.03982
Target:  5'- cCCGCGGCGAGaGCGCGcGCAGC-CCCa -3'
miRNA:   3'- aGGCGCCGCUC-CGUGC-CGUCGcGGGc -5'
31080 5' -65.6 NC_006560.1 + 5489 0.81 0.046408
Target:  5'- gUCGCGGCGAGGguCGGCGGCGgUCGc -3'
miRNA:   3'- aGGCGCCGCUCCguGCCGUCGCgGGC- -5'
31080 5' -65.6 NC_006560.1 + 25099 0.81 0.05009
Target:  5'- gCCGCGGCGAGGCGCacucGCAccGCGCCUGc -3'
miRNA:   3'- aGGCGCCGCUCCGUGc---CGU--CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 25059 0.8 0.054055
Target:  5'- cCCGCGcGCGAGGCGgccgccgcCGGC-GCGCCCGa -3'
miRNA:   3'- aGGCGC-CGCUCCGU--------GCCGuCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 4856 0.8 0.057883
Target:  5'- gCCgGCGGCGAGGUucgcgucgacggcgGCGGCGGCGCCgGc -3'
miRNA:   3'- aGG-CGCCGCUCCG--------------UGCCGUCGCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 4698 0.8 0.058324
Target:  5'- aCgGCGGCGcGcGCGCGGCGGCGCUCGc -3'
miRNA:   3'- aGgCGCCGCuC-CGUGCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 4004 0.79 0.066176
Target:  5'- gCCGUagccGGCGAGGCcgggggcgGCGGCGGCGuCCCGg -3'
miRNA:   3'- aGGCG----CCGCUCCG--------UGCCGUCGC-GGGC- -5'
31080 5' -65.6 NC_006560.1 + 87867 0.79 0.067864
Target:  5'- gCCGCGGUGGGGCGCGGgugggggGGCGCgCCGu -3'
miRNA:   3'- aGGCGCCGCUCCGUGCCg------UCGCG-GGC- -5'
31080 5' -65.6 NC_006560.1 + 27455 0.79 0.069593
Target:  5'- cCCGCGGCGcccgagagcgcGGGCAaccagcacgccCGGCAGCGUCCGc -3'
miRNA:   3'- aGGCGCCGC-----------UCCGU-----------GCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 2386 0.78 0.076946
Target:  5'- cUCgCGCGGCGGcagcGGCACGGCGGUGUCgGg -3'
miRNA:   3'- -AG-GCGCCGCU----CCGUGCCGUCGCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 2455 0.78 0.080895
Target:  5'- gCCGCGGCccAGGCGCGGCGGCGgCgCGu -3'
miRNA:   3'- aGGCGCCGc-UCCGUGCCGUCGCgG-GC- -5'
31080 5' -65.6 NC_006560.1 + 3882 0.78 0.084827
Target:  5'- cUCCGCGGCGGcgucggcGGCGuCGGCGGCGUCgGc -3'
miRNA:   3'- -AGGCGCCGCU-------CCGU-GCCGUCGCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 76688 0.78 0.085038
Target:  5'- cUUCG-GGCGAGuGCGCGGgGGCGCCUGg -3'
miRNA:   3'- -AGGCgCCGCUC-CGUGCCgUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 70791 0.78 0.087185
Target:  5'- gUCGCGGCGccGGC-CGGCAGCacGCCCGa -3'
miRNA:   3'- aGGCGCCGCu-CCGuGCCGUCG--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.