miRNA display CGI


Results 1 - 20 of 547 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 5' -65.6 NC_006560.1 + 14 0.69 0.346313
Target:  5'- uUCC-CGGCGGGGCGguuCGGCGGCGg--- -3'
miRNA:   3'- -AGGcGCCGCUCCGU---GCCGUCGCgggc -5'
31080 5' -65.6 NC_006560.1 + 116 0.67 0.415048
Target:  5'- gCCGCGGCc-GGCGCggguuugGGCGGgGCCgGc -3'
miRNA:   3'- aGGCGCCGcuCCGUG-------CCGUCgCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 202 0.68 0.376174
Target:  5'- uUCCGCGcGCGcgccGcCGCGGgAGgGCCCGg -3'
miRNA:   3'- -AGGCGC-CGCuc--C-GUGCCgUCgCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 511 0.69 0.309426
Target:  5'- cCCGCcacgggcgccggggGGCGGcGGC-CGGCcGCGCCCc -3'
miRNA:   3'- aGGCG--------------CCGCU-CCGuGCCGuCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 678 0.68 0.353617
Target:  5'- cCCGCGGCGcGGGCuCGucGCGG-GCCCc -3'
miRNA:   3'- aGGCGCCGC-UCCGuGC--CGUCgCGGGc -5'
31080 5' -65.6 NC_006560.1 + 919 0.66 0.484382
Target:  5'- cCCgGCGGUgGAGGCcuaggggagccCGGCAGC-CCCGc -3'
miRNA:   3'- aGG-CGCCG-CUCCGu----------GCCGUCGcGGGC- -5'
31080 5' -65.6 NC_006560.1 + 1351 0.67 0.424108
Target:  5'- aCCGUGcGCGcGGGUcccccGCGGCccgcacGGCGCCCc -3'
miRNA:   3'- aGGCGC-CGC-UCCG-----UGCCG------UCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 1503 0.72 0.22505
Target:  5'- -aCGcCGGCGGGaGCGCGuGCAucgggccccgggcgcGCGCCCGg -3'
miRNA:   3'- agGC-GCCGCUC-CGUGC-CGU---------------CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 1641 0.71 0.255513
Target:  5'- gUCUGUGGCGGGGC-CGG-GGCGUCUc -3'
miRNA:   3'- -AGGCGCCGCUCCGuGCCgUCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 1877 0.72 0.19865
Target:  5'- gUCGCgGGCGGGGgucgcggGCGGCGGCGCCgGc -3'
miRNA:   3'- aGGCG-CCGCUCCg------UGCCGUCGCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 1986 0.7 0.291817
Target:  5'- cUCGgGGCcGGGCcagcuccaggGCGGCGGCGUCCu -3'
miRNA:   3'- aGGCgCCGcUCCG----------UGCCGUCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 2058 0.71 0.261296
Target:  5'- cCCaGCGcacGCGcGGCGCGGCGGCgggguccggggGCCCGg -3'
miRNA:   3'- aGG-CGC---CGCuCCGUGCCGUCG-----------CGGGC- -5'
31080 5' -65.6 NC_006560.1 + 2121 0.67 0.413414
Target:  5'- -gCGCGGCGucgggguccggcucGGGCAgGGCGcGCGCgCa -3'
miRNA:   3'- agGCGCCGC--------------UCCGUgCCGU-CGCGgGc -5'
31080 5' -65.6 NC_006560.1 + 2172 0.73 0.176652
Target:  5'- -gCGCGGCG-GGCAgGGCcucGgGCCCGg -3'
miRNA:   3'- agGCGCCGCuCCGUgCCGu--CgCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 2256 0.68 0.353617
Target:  5'- cCCaGCGcGCGcAGGCGCGGUgcgaguGCGCCUc -3'
miRNA:   3'- aGG-CGC-CGC-UCCGUGCCGu-----CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 2290 0.77 0.096297
Target:  5'- gCCGCGGCGgaagucGGGCGCgccGGCGGCGgCCGc -3'
miRNA:   3'- aGGCGCCGC------UCCGUG---CCGUCGCgGGC- -5'
31080 5' -65.6 NC_006560.1 + 2326 0.69 0.325056
Target:  5'- cUCGCGcGCG-GGCGaguCGGCGGCGCggCCGu -3'
miRNA:   3'- aGGCGC-CGCuCCGU---GCCGUCGCG--GGC- -5'
31080 5' -65.6 NC_006560.1 + 2386 0.78 0.076946
Target:  5'- cUCgCGCGGCGGcagcGGCACGGCGGUGUCgGg -3'
miRNA:   3'- -AG-GCGCCGCU----CCGUGCCGUCGCGGgC- -5'
31080 5' -65.6 NC_006560.1 + 2455 0.78 0.080895
Target:  5'- gCCGCGGCccAGGCGCGGCGGCGgCgCGu -3'
miRNA:   3'- aGGCGCCGc-UCCGUGCCGUCGCgG-GC- -5'
31080 5' -65.6 NC_006560.1 + 2482 0.66 0.49333
Target:  5'- gUCGgGGUaGAGGCGCGcGCAgGCGgCCu -3'
miRNA:   3'- aGGCgCCG-CUCCGUGC-CGU-CGCgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.