miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 5' -55.6 NC_006560.1 + 50043 1.08 0.004136
Target:  5'- cGGAGAGGAGGAGGACGACGUCAUGGa -3'
miRNA:   3'- -CCUCUCCUCCUCCUGCUGCAGUACCa -5'
31089 5' -55.6 NC_006560.1 + 36482 0.79 0.312265
Target:  5'- uGGGGGGGAGGGGGAUGGgGggAUGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUGCUgCagUACCa -5'
31089 5' -55.6 NC_006560.1 + 36422 0.79 0.312265
Target:  5'- uGGGGGGGAGGGGGAUGGgGggAUGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUGCUgCagUACCa -5'
31089 5' -55.6 NC_006560.1 + 22351 0.77 0.373088
Target:  5'- cGGcGGGGGAGGAGGACGACGgCGgcgacGGg -3'
miRNA:   3'- -CC-UCUCCUCCUCCUGCUGCaGUa----CCa -5'
31089 5' -55.6 NC_006560.1 + 34398 0.77 0.3895
Target:  5'- gGGGGGGGGGGuGGGGCGGCGgccgGUGGg -3'
miRNA:   3'- -CCUCUCCUCC-UCCUGCUGCag--UACCa -5'
31089 5' -55.6 NC_006560.1 + 36388 0.76 0.414988
Target:  5'- gGGGGAGGGGGAGGGgGAUGgggggAUGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUGCag---UACCa -5'
31089 5' -55.6 NC_006560.1 + 25828 0.75 0.459653
Target:  5'- aGAGGGGAGaGGGGACGGCGUggCcgGGc -3'
miRNA:   3'- cCUCUCCUC-CUCCUGCUGCA--GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 143695 0.75 0.484808
Target:  5'- aGGGGAGGGGGcGGGACGaggcgagagcgggcGCGUCggGGa -3'
miRNA:   3'- -CCUCUCCUCC-UCCUGC--------------UGCAGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 34359 0.75 0.506745
Target:  5'- uGGGGAGGAGGGGGGCGcccgccGCcUCggGGUc -3'
miRNA:   3'- -CCUCUCCUCCUCCUGC------UGcAGuaCCA- -5'
31089 5' -55.6 NC_006560.1 + 30277 0.74 0.526157
Target:  5'- gGGAGGGGAGGGGaGugGugGggagGGUg -3'
miRNA:   3'- -CCUCUCCUCCUC-CugCugCaguaCCA- -5'
31089 5' -55.6 NC_006560.1 + 81203 0.74 0.534984
Target:  5'- gGGGGcgcgacggcgaccGGGAGGAGGACGGCGgCGgagGGg -3'
miRNA:   3'- -CCUC-------------UCCUCCUCCUGCUGCaGUa--CCa -5'
31089 5' -55.6 NC_006560.1 + 26243 0.74 0.534984
Target:  5'- cGGAGGccgggccGGAGGGGGGCG-CGUCGcGGg -3'
miRNA:   3'- -CCUCU-------CCUCCUCCUGCuGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 8214 0.74 0.555774
Target:  5'- cGGGGGGAGG-GGACG-CGUCGcGGg -3'
miRNA:   3'- cCUCUCCUCCuCCUGCuGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 34916 0.73 0.565758
Target:  5'- -uGGGGGGGGGGGACGAgGUUucgGGg -3'
miRNA:   3'- ccUCUCCUCCUCCUGCUgCAGua-CCa -5'
31089 5' -55.6 NC_006560.1 + 93990 0.73 0.575787
Target:  5'- cGGGGAGGGGGccGGGGCGggggACGUCGcGGc -3'
miRNA:   3'- -CCUCUCCUCC--UCCUGC----UGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 95012 0.73 0.595959
Target:  5'- gGGGGAGGAGGGGGAaGGCGg---GGc -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 15041 0.73 0.616234
Target:  5'- cGGAGAcucgcgccGGGGGGcGACGGCGUCgGUGGg -3'
miRNA:   3'- -CCUCU--------CCUCCUcCUGCUGCAG-UACCa -5'
31089 5' -55.6 NC_006560.1 + 34060 0.72 0.626394
Target:  5'- gGGuGAGGAGGGGGGCGAgGggaCGaGGg -3'
miRNA:   3'- -CCuCUCCUCCUCCUGCUgCa--GUaCCa -5'
31089 5' -55.6 NC_006560.1 + 36261 0.72 0.636557
Target:  5'- uGGGGAGGAGGGGGAgGAgGgaggagGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCagua--CCa -5'
31089 5' -55.6 NC_006560.1 + 49680 0.72 0.636557
Target:  5'- gGGGGAGGGGGuGGugGGUGUguaUAUGGg -3'
miRNA:   3'- -CCUCUCCUCCuCCugCUGCA---GUACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.