miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 5' -55.6 NC_006560.1 + 37 0.67 0.888512
Target:  5'- cGGGGGGGgugcguuuGGGGGGGCG-CGUU-UGGg -3'
miRNA:   3'- -CCUCUCC--------UCCUCCUGCuGCAGuACCa -5'
31089 5' -55.6 NC_006560.1 + 8214 0.74 0.555774
Target:  5'- cGGGGGGAGG-GGACG-CGUCGcGGg -3'
miRNA:   3'- cCUCUCCUCCuCCUGCuGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 8880 0.68 0.852035
Target:  5'- gGGGGAGGcGGGGGGCuucgcGCGggccacgCGUGGUc -3'
miRNA:   3'- -CCUCUCCuCCUCCUGc----UGCa------GUACCA- -5'
31089 5' -55.6 NC_006560.1 + 9079 0.67 0.895158
Target:  5'- gGGAGGGGcGGcGGGGCGACGgc--GGa -3'
miRNA:   3'- -CCUCUCCuCC-UCCUGCUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 11114 0.71 0.697182
Target:  5'- gGGcGGGGGGGGGGGGCucagcgGGCGUCGaGGg -3'
miRNA:   3'- -CC-UCUCCUCCUCCUG------CUGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 12715 0.66 0.930187
Target:  5'- gGGGGuGGGGGcGGGGCccuggaugguGACGUCGUcGGc -3'
miRNA:   3'- -CCUCuCCUCC-UCCUG----------CUGCAGUA-CCa -5'
31089 5' -55.6 NC_006560.1 + 14774 0.69 0.819291
Target:  5'- cGGGAGGGGuGGGGGCGGgcacgggcucCGUCggGGg -3'
miRNA:   3'- cCUCUCCUC-CUCCUGCU----------GCAGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 15041 0.73 0.616234
Target:  5'- cGGAGAcucgcgccGGGGGGcGACGGCGUCgGUGGg -3'
miRNA:   3'- -CCUCU--------CCUCCUcCUGCUGCAG-UACCa -5'
31089 5' -55.6 NC_006560.1 + 16369 0.66 0.935204
Target:  5'- cGGAgcGAGGGGGGgcauggcggcgcGGGCGgGCGUCGccUGGa -3'
miRNA:   3'- -CCU--CUCCUCCU------------CCUGC-UGCAGU--ACCa -5'
31089 5' -55.6 NC_006560.1 + 22351 0.77 0.373088
Target:  5'- cGGcGGGGGAGGAGGACGACGgCGgcgacGGg -3'
miRNA:   3'- -CC-UCUCCUCCUCCUGCUGCaGUa----CCa -5'
31089 5' -55.6 NC_006560.1 + 23463 0.66 0.919447
Target:  5'- cGGcGGAGGAGGGGGAcgcCGACGcCGc--- -3'
miRNA:   3'- -CC-UCUCCUCCUCCU---GCUGCaGUacca -5'
31089 5' -55.6 NC_006560.1 + 25620 0.67 0.895158
Target:  5'- gGGAGAGGGGGAGGGgGGgaGggggGGa -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUg-CaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 25647 0.66 0.913723
Target:  5'- aGGGGGGGAGGGGGA-GAgGg---GGa -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 25714 0.67 0.907766
Target:  5'- gGGAGAGGGGGAGaGGgggaGACGcCccGGc -3'
miRNA:   3'- -CCUCUCCUCCUC-CUg---CUGCaGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 25828 0.75 0.459653
Target:  5'- aGAGGGGAGaGGGGACGGCGUggCcgGGc -3'
miRNA:   3'- cCUCUCCUC-CUCCUGCUGCA--GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 25948 0.69 0.827747
Target:  5'- cGGAGGGGGGcGAGGGCcGCGgg--GGg -3'
miRNA:   3'- -CCUCUCCUC-CUCCUGcUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 26243 0.74 0.534984
Target:  5'- cGGAGGccgggccGGAGGGGGGCG-CGUCGcGGg -3'
miRNA:   3'- -CCUCU-------CCUCCUCCUGCuGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 26625 0.69 0.819291
Target:  5'- -cGGGGGGGGGGGACGGgGcCGcGGg -3'
miRNA:   3'- ccUCUCCUCCUCCUGCUgCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 26647 0.66 0.939985
Target:  5'- nGGGGGGGAcggggccgcggGGGGGACGGgGcCGcGGg -3'
miRNA:   3'- -CCUCUCCU-----------CCUCCUGCUgCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 26975 0.69 0.810666
Target:  5'- cGGGGcGGGGGGGGGCGgGCG-CAcGGg -3'
miRNA:   3'- -CCUCuCCUCCUCCUGC-UGCaGUaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.