miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 3' -60.5 NC_006560.1 + 49550 1.1 0.001102
Target:  5'- gCCCCGUCGCGGCCUCGCGUUAGGGUCu -3'
miRNA:   3'- -GGGGCAGCGCCGGAGCGCAAUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 67458 0.85 0.057099
Target:  5'- uCCCCGUCGCGGuCCUCGCGUauccaUAGGaUCg -3'
miRNA:   3'- -GGGGCAGCGCC-GGAGCGCA-----AUCCcAG- -5'
31090 3' -60.5 NC_006560.1 + 15333 0.83 0.077796
Target:  5'- gUCCCGuUCGCGGCCggCGCGgccGGGGUCg -3'
miRNA:   3'- -GGGGC-AGCGCCGGa-GCGCaa-UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 43125 0.8 0.142451
Target:  5'- gUCCGUCGCGGCCgCGgGgucGGGGUCg -3'
miRNA:   3'- gGGGCAGCGCCGGaGCgCaa-UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 124824 0.78 0.173252
Target:  5'- gCCCGUCGCGGgCgugcaCGCGUgcGGGGUCc -3'
miRNA:   3'- gGGGCAGCGCCgGa----GCGCAa-UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 34749 0.77 0.209856
Target:  5'- gCCCG-CGCGucGCCUCGCGagcucgAGGGUCg -3'
miRNA:   3'- gGGGCaGCGC--CGGAGCGCaa----UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 66323 0.75 0.262379
Target:  5'- gCCCCGgguugccggugugCGCGGCCUCGUG--GGGGcCg -3'
miRNA:   3'- -GGGGCa------------GCGCCGGAGCGCaaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 71733 0.74 0.303028
Target:  5'- aCCCGUcggggCGCGGCCUgcgcUGCGUguucuccAGGGUCu -3'
miRNA:   3'- gGGGCA-----GCGCCGGA----GCGCAa------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 6080 0.74 0.309801
Target:  5'- gCCCGcUCGCGcCCUCGCGUcgAGGG-Cg -3'
miRNA:   3'- gGGGC-AGCGCcGGAGCGCAa-UCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 139264 0.74 0.323691
Target:  5'- cCCCCGggggcgCGCGGUCgucggCGCGggGGGG-Ca -3'
miRNA:   3'- -GGGGCa-----GCGCCGGa----GCGCaaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 45442 0.73 0.345385
Target:  5'- gCCCGg-GCaGCCaUCGCGUgGGGGUCa -3'
miRNA:   3'- gGGGCagCGcCGG-AGCGCAaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 122641 0.72 0.383807
Target:  5'- gCCCC--UGCGGCC-CGCGggGGGGcCg -3'
miRNA:   3'- -GGGGcaGCGCCGGaGCGCaaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 142349 0.72 0.399951
Target:  5'- gCCCCG-CGCGcGCCUCGgGggccgGGGG-Cg -3'
miRNA:   3'- -GGGGCaGCGC-CGGAGCgCaa---UCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 29341 0.72 0.399951
Target:  5'- cCCUCG-CGCGGCCUCGgagccccGGGUCg -3'
miRNA:   3'- -GGGGCaGCGCCGGAGCgcaau--CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 107536 0.72 0.407355
Target:  5'- gCCCgCGUCGCccggacgGGCCUCcCGUcccugugGGGGUCg -3'
miRNA:   3'- -GGG-GCAGCG-------CCGGAGcGCAa------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 101932 0.72 0.408183
Target:  5'- cCCUCGUCGCcgauGGCg-CGCGccAGGGUCg -3'
miRNA:   3'- -GGGGCAGCG----CCGgaGCGCaaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 132313 0.71 0.441277
Target:  5'- aUCCCagcggCGCGGCCggggcgcacgcggUCGCGgggcgGGGGUCg -3'
miRNA:   3'- -GGGGca---GCGCCGG-------------AGCGCaa---UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 109778 0.71 0.442146
Target:  5'- gCCCCGggGUGGCCUCgaagggcgaacGCGUgugucGGGUCc -3'
miRNA:   3'- -GGGGCagCGCCGGAG-----------CGCAau---CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 26086 0.71 0.450883
Target:  5'- aCCCGg-GCGGCCcggCGCGgcGGGGg- -3'
miRNA:   3'- gGGGCagCGCCGGa--GCGCaaUCCCag -5'
31090 3' -60.5 NC_006560.1 + 141606 0.71 0.468638
Target:  5'- gCCCGcCGCGGCCcCGCcg-GGGGa- -3'
miRNA:   3'- gGGGCaGCGCCGGaGCGcaaUCCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.