miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 3' -60.5 NC_006560.1 + 108 0.7 0.505174
Target:  5'- cCCCCGcggcCGCGGCCggCGCGgguuuGGG-Cg -3'
miRNA:   3'- -GGGGCa---GCGCCGGa-GCGCaau--CCCaG- -5'
31090 3' -60.5 NC_006560.1 + 432 0.67 0.655918
Target:  5'- uCCCCGgccucCGCGGCCUCcGCGgccuccccggcGGG-Cg -3'
miRNA:   3'- -GGGGCa----GCGCCGGAG-CGCaau--------CCCaG- -5'
31090 3' -60.5 NC_006560.1 + 736 0.68 0.652978
Target:  5'- gCCCCGUcccccccCGCGGCCccguccccccccccCGCGgcgcGGGUCc -3'
miRNA:   3'- -GGGGCA-------GCGCCGGa-------------GCGCaau-CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 1863 0.66 0.764555
Target:  5'- ---gGUCGCGGgCgggggUCGCGggcgGGGGUCg -3'
miRNA:   3'- ggggCAGCGCCgG-----AGCGCaa--UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 2452 0.68 0.611763
Target:  5'- -gCCGcCGCGGCCcaggcgcggcggcggCGCGUcGGGGUa -3'
miRNA:   3'- ggGGCaGCGCCGGa--------------GCGCAaUCCCAg -5'
31090 3' -60.5 NC_006560.1 + 3254 0.66 0.761823
Target:  5'- gCCCGg-GCGGCg-CGCGgcgccagccgccgcgGGGGUCg -3'
miRNA:   3'- gGGGCagCGCCGgaGCGCaa-------------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 4313 0.66 0.736839
Target:  5'- cUCCaCGUCGcCGGCCgucaCGCGc--GGGUUc -3'
miRNA:   3'- -GGG-GCAGC-GCCGGa---GCGCaauCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 4352 0.66 0.736839
Target:  5'- gCCCa---UGGCCUCGCGguccGGGUCg -3'
miRNA:   3'- gGGGcagcGCCGGAGCGCaau-CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 4742 0.7 0.499613
Target:  5'- gCCCGUCucggcgGCGGCC-CGCGgcggcggcggcgcGGGGUCc -3'
miRNA:   3'- gGGGCAG------CGCCGGaGCGCaa-----------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 5477 0.69 0.562087
Target:  5'- gCUCCGagCGCGGU--CGCGgcgAGGGUCg -3'
miRNA:   3'- -GGGGCa-GCGCCGgaGCGCaa-UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 6080 0.74 0.309801
Target:  5'- gCCCGcUCGCGcCCUCGCGUcgAGGG-Cg -3'
miRNA:   3'- gGGGC-AGCGCcGGAGCGCAa-UCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 9280 0.68 0.600989
Target:  5'- gCCCCGgCGC-GCCUCGgGggAccacGGGUCc -3'
miRNA:   3'- -GGGGCaGCGcCGGAGCgCaaU----CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 10407 0.67 0.70741
Target:  5'- cCCgCUGUCGCucggucgGGCCUCGCGg-AGcGUCa -3'
miRNA:   3'- -GG-GGCAGCG-------CCGGAGCGCaaUCcCAG- -5'
31090 3' -60.5 NC_006560.1 + 11534 0.67 0.679365
Target:  5'- cCCCCGcCGgGGg-UCGCGgggucgGGGGUCu -3'
miRNA:   3'- -GGGGCaGCgCCggAGCGCaa----UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 11573 0.66 0.764555
Target:  5'- uCCCCGaccucCGCcGCCUCGgGggucgcGGGGUUg -3'
miRNA:   3'- -GGGGCa----GCGcCGGAGCgCaa----UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 11733 0.68 0.620591
Target:  5'- gCCCCaGgcgCGgGGCCcgcagcggCGCGUccGGGUCg -3'
miRNA:   3'- -GGGG-Ca--GCgCCGGa-------GCGCAauCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 12205 0.66 0.755414
Target:  5'- gCCCCGaCG-GGCCcCGCGgccaggAGGGa- -3'
miRNA:   3'- -GGGGCaGCgCCGGaGCGCaa----UCCCag -5'
31090 3' -60.5 NC_006560.1 + 12411 0.7 0.537162
Target:  5'- cCCCCGcgCGCGGCCgacgaacggggaacUGCGUcGGGG-Cg -3'
miRNA:   3'- -GGGGCa-GCGCCGGa-------------GCGCAaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 14024 0.66 0.727423
Target:  5'- gCCCGgCGgaCGGggUCGCGUcGGGGUCa -3'
miRNA:   3'- gGGGCaGC--GCCggAGCGCAaUCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 14798 0.69 0.591216
Target:  5'- gCUCCGUCgGgGGgCUCGgGggccggAGGGUCa -3'
miRNA:   3'- -GGGGCAG-CgCCgGAGCgCaa----UCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.