miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31091 3' -46.8 NC_006560.1 + 47757 1.09 0.024512
Target:  5'- gCCGCGAUCGAAUAAACACGCACGAAAc -3'
miRNA:   3'- -GGCGCUAGCUUAUUUGUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 75221 0.81 0.69673
Target:  5'- gCGCGGUCGccgAGGCGCGCGCGGGc -3'
miRNA:   3'- gGCGCUAGCuuaUUUGUGCGUGCUUu -5'
31091 3' -46.8 NC_006560.1 + 94528 0.78 0.835499
Target:  5'- cCCGCGGaCGAGUcgGCGCGcCGCGAGg -3'
miRNA:   3'- -GGCGCUaGCUUAuuUGUGC-GUGCUUu -5'
31091 3' -46.8 NC_006560.1 + 76493 0.77 0.860852
Target:  5'- -gGCGGUCGAcuggcugGAGCACGCGCGGc- -3'
miRNA:   3'- ggCGCUAGCUua-----UUUGUGCGUGCUuu -5'
31091 3' -46.8 NC_006560.1 + 129645 0.75 0.923724
Target:  5'- gCCGUGggCGAGgcgGAGCACGCGCuGAu- -3'
miRNA:   3'- -GGCGCuaGCUUa--UUUGUGCGUG-CUuu -5'
31091 3' -46.8 NC_006560.1 + 118157 0.75 0.939418
Target:  5'- aCCGCGAggacgucUCGAu----CACGCGCGAGGa -3'
miRNA:   3'- -GGCGCU-------AGCUuauuuGUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 25785 0.74 0.953711
Target:  5'- gCCGCgucGAUCGGAggaGGGgGCGCGCGAGGg -3'
miRNA:   3'- -GGCG---CUAGCUUa--UUUgUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 33844 0.74 0.957788
Target:  5'- gCCGCGggCGuggGGGCGCGCGCGc-- -3'
miRNA:   3'- -GGCGCuaGCuuaUUUGUGCGUGCuuu -5'
31091 3' -46.8 NC_006560.1 + 27172 0.74 0.957788
Target:  5'- cCCGCGG-CGGc---GCGCGCGCGGAAa -3'
miRNA:   3'- -GGCGCUaGCUuauuUGUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 139962 0.74 0.961613
Target:  5'- aCCGCGGUCaGGAUGuugcGCAgGCugGggGg -3'
miRNA:   3'- -GGCGCUAG-CUUAUu---UGUgCGugCuuU- -5'
31091 3' -46.8 NC_006560.1 + 38005 0.73 0.968526
Target:  5'- gCCGCGAgguggUGAAUcucggGGGCGCGCAgGAAGa -3'
miRNA:   3'- -GGCGCUa----GCUUA-----UUUGUGCGUgCUUU- -5'
31091 3' -46.8 NC_006560.1 + 16932 0.73 0.977162
Target:  5'- aCCGgGGUCGAccagGAGCccCGCGCGAAGc -3'
miRNA:   3'- -GGCgCUAGCUua--UUUGu-GCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 14038 0.72 0.981858
Target:  5'- gUCGCG-UCGGGgucacgcGGACACGCugGAGAc -3'
miRNA:   3'- -GGCGCuAGCUUa------UUUGUGCGugCUUU- -5'
31091 3' -46.8 NC_006560.1 + 138398 0.72 0.981858
Target:  5'- cCCGCGG-CGA--GAGCGCGCGCa--- -3'
miRNA:   3'- -GGCGCUaGCUuaUUUGUGCGUGcuuu -5'
31091 3' -46.8 NC_006560.1 + 150090 0.72 0.981858
Target:  5'- gCCGCGAgcUCGGGc-AGCAgGCGCGAGc -3'
miRNA:   3'- -GGCGCU--AGCUUauUUGUgCGUGCUUu -5'
31091 3' -46.8 NC_006560.1 + 126500 0.72 0.985789
Target:  5'- cUCGCGGUgGuagaGGUAGGCGCGCACGc-- -3'
miRNA:   3'- -GGCGCUAgC----UUAUUUGUGCGUGCuuu -5'
31091 3' -46.8 NC_006560.1 + 26525 0.72 0.985789
Target:  5'- gCCGUGggCGG----GCGCGCGCGggGc -3'
miRNA:   3'- -GGCGCuaGCUuauuUGUGCGUGCuuU- -5'
31091 3' -46.8 NC_006560.1 + 3104 0.72 0.985789
Target:  5'- gCGCGGccagCGAGgccAGCGCGCGCGGGu -3'
miRNA:   3'- gGCGCUa---GCUUau-UUGUGCGUGCUUu -5'
31091 3' -46.8 NC_006560.1 + 126436 0.71 0.989033
Target:  5'- gCCG-GAUCGcc-GAGCGCGCGCGGu- -3'
miRNA:   3'- -GGCgCUAGCuuaUUUGUGCGUGCUuu -5'
31091 3' -46.8 NC_006560.1 + 132893 0.71 0.990422
Target:  5'- aCGCGGUCGAA-GGGCgACGUGCGGc- -3'
miRNA:   3'- gGCGCUAGCUUaUUUG-UGCGUGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.