Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31091 | 3' | -46.8 | NC_006560.1 | + | 83486 | 0.66 | 0.999956 |
Target: 5'- gCGCGcaacgcCGAGUuuGAgGCGCGCGAGGg -3' miRNA: 3'- gGCGCua----GCUUAu-UUgUGCGUGCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 14038 | 0.72 | 0.981858 |
Target: 5'- gUCGCG-UCGGGgucacgcGGACACGCugGAGAc -3' miRNA: 3'- -GGCGCuAGCUUa------UUUGUGCGugCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 138398 | 0.72 | 0.981858 |
Target: 5'- cCCGCGG-CGA--GAGCGCGCGCa--- -3' miRNA: 3'- -GGCGCUaGCUuaUUUGUGCGUGcuuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 150090 | 0.72 | 0.981858 |
Target: 5'- gCCGCGAgcUCGGGc-AGCAgGCGCGAGc -3' miRNA: 3'- -GGCGCU--AGCUUauUUGUgCGUGCUUu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 3104 | 0.72 | 0.985789 |
Target: 5'- gCGCGGccagCGAGgccAGCGCGCGCGGGu -3' miRNA: 3'- gGCGCUa---GCUUau-UUGUGCGUGCUUu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 26525 | 0.72 | 0.985789 |
Target: 5'- gCCGUGggCGG----GCGCGCGCGggGc -3' miRNA: 3'- -GGCGCuaGCUuauuUGUGCGUGCuuU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 126500 | 0.72 | 0.985789 |
Target: 5'- cUCGCGGUgGuagaGGUAGGCGCGCACGc-- -3' miRNA: 3'- -GGCGCUAgC----UUAUUUGUGCGUGCuuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 126436 | 0.71 | 0.989033 |
Target: 5'- gCCG-GAUCGcc-GAGCGCGCGCGGu- -3' miRNA: 3'- -GGCgCUAGCuuaUUUGUGCGUGCUuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 112981 | 0.71 | 0.990422 |
Target: 5'- aCCGgGAcugcCGggUGAACGCGgGCGGGc -3' miRNA: 3'- -GGCgCUa---GCuuAUUUGUGCgUGCUUu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 16932 | 0.73 | 0.977162 |
Target: 5'- aCCGgGGUCGAccagGAGCccCGCGCGAAGc -3' miRNA: 3'- -GGCgCUAGCUua--UUUGu-GCGUGCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 38005 | 0.73 | 0.968526 |
Target: 5'- gCCGCGAgguggUGAAUcucggGGGCGCGCAgGAAGa -3' miRNA: 3'- -GGCGCUa----GCUUA-----UUUGUGCGUgCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 139962 | 0.74 | 0.961613 |
Target: 5'- aCCGCGGUCaGGAUGuugcGCAgGCugGggGg -3' miRNA: 3'- -GGCGCUAG-CUUAUu---UGUgCGugCuuU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 75221 | 0.81 | 0.69673 |
Target: 5'- gCGCGGUCGccgAGGCGCGCGCGGGc -3' miRNA: 3'- gGCGCUAGCuuaUUUGUGCGUGCUUu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 94528 | 0.78 | 0.835499 |
Target: 5'- cCCGCGGaCGAGUcgGCGCGcCGCGAGg -3' miRNA: 3'- -GGCGCUaGCUUAuuUGUGC-GUGCUUu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 76493 | 0.77 | 0.860852 |
Target: 5'- -gGCGGUCGAcuggcugGAGCACGCGCGGc- -3' miRNA: 3'- ggCGCUAGCUua-----UUUGUGCGUGCUuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 129645 | 0.75 | 0.923724 |
Target: 5'- gCCGUGggCGAGgcgGAGCACGCGCuGAu- -3' miRNA: 3'- -GGCGCuaGCUUa--UUUGUGCGUG-CUuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 118157 | 0.75 | 0.939418 |
Target: 5'- aCCGCGAggacgucUCGAu----CACGCGCGAGGa -3' miRNA: 3'- -GGCGCU-------AGCUuauuuGUGCGUGCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 25785 | 0.74 | 0.953711 |
Target: 5'- gCCGCgucGAUCGGAggaGGGgGCGCGCGAGGg -3' miRNA: 3'- -GGCG---CUAGCUUa--UUUgUGCGUGCUUU- -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 33844 | 0.74 | 0.957788 |
Target: 5'- gCCGCGggCGuggGGGCGCGCGCGc-- -3' miRNA: 3'- -GGCGCuaGCuuaUUUGUGCGUGCuuu -5' |
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31091 | 3' | -46.8 | NC_006560.1 | + | 27172 | 0.74 | 0.957788 |
Target: 5'- cCCGCGG-CGGc---GCGCGCGCGGAAa -3' miRNA: 3'- -GGCGCUaGCUuauuUGUGCGUGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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