miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 3' -54.7 NC_006560.1 + 3419 0.69 0.848223
Target:  5'- gCGGgcgGgcGGcgGGCGcgGGcgCCCGCGGg -3'
miRNA:   3'- -GCCa--CauCCa-CUGCa-UCuaGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 8544 0.69 0.845848
Target:  5'- uGGUGgGGGUGgggcgacuguggcuGCGgcGAUCCCgucaGCGGa -3'
miRNA:   3'- gCCACaUCCAC--------------UGCauCUAGGG----CGCC- -5'
31094 3' -54.7 NC_006560.1 + 13146 0.7 0.8152
Target:  5'- -----cAGGcgGACGUAGGUCCCcGCGGu -3'
miRNA:   3'- gccacaUCCa-CUGCAUCUAGGG-CGCC- -5'
31094 3' -54.7 NC_006560.1 + 14203 0.71 0.77957
Target:  5'- gGGcGUGGGguggucgGGCGgGGcgCCCGCGGu -3'
miRNA:   3'- gCCaCAUCCa------CUGCaUCuaGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 16664 0.65 0.965076
Target:  5'- cCGGUGgcGGUacugcgaGACGaggcgGGAgCCCGCGu -3'
miRNA:   3'- -GCCACauCCA-------CUGCa----UCUaGGGCGCc -5'
31094 3' -54.7 NC_006560.1 + 27841 0.67 0.922175
Target:  5'- gGGUGccggGGGUGcCGgGGGUcucccgCCCGCGGc -3'
miRNA:   3'- gCCACa---UCCACuGCaUCUA------GGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 28049 0.68 0.91075
Target:  5'- uCGGUGgucuugGGGUcgGugGgcGGUCCUGgGGu -3'
miRNA:   3'- -GCCACa-----UCCA--CugCauCUAGGGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 30250 0.72 0.732183
Target:  5'- cCGGU--GGGUGGCG-GGAggCCGCGGg -3'
miRNA:   3'- -GCCAcaUCCACUGCaUCUagGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 33817 0.66 0.950836
Target:  5'- aCGGggGgcggGGGUcGGCGgGGGUCggCCGCGGg -3'
miRNA:   3'- -GCCa-Ca---UCCA-CUGCaUCUAG--GGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 34786 0.7 0.8152
Target:  5'- aGGUGUcGGG-GGCugcgGGGUUCCGCGGc -3'
miRNA:   3'- gCCACA-UCCaCUGca--UCUAGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 34911 0.69 0.856015
Target:  5'- gGGUGUGGGgggggggGACG-AGGUUUCGgGGc -3'
miRNA:   3'- gCCACAUCCa------CUGCaUCUAGGGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 39592 0.66 0.958555
Target:  5'- uCGGUGgcGGgcGCGccGG-CCCGCGGa -3'
miRNA:   3'- -GCCACauCCacUGCauCUaGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 39927 0.71 0.770316
Target:  5'- gGGUGgcUGGGUGGC-UGGggCCCGuCGGu -3'
miRNA:   3'- gCCAC--AUCCACUGcAUCuaGGGC-GCC- -5'
31094 3' -54.7 NC_006560.1 + 43817 0.66 0.962084
Target:  5'- gGGUGUGGaUGGCGaAGGUggccUCCGCGu -3'
miRNA:   3'- gCCACAUCcACUGCaUCUA----GGGCGCc -5'
31094 3' -54.7 NC_006560.1 + 45705 1.1 0.004022
Target:  5'- cCGGUGUAGGUGACGUAGAUCCCGCGGc -3'
miRNA:   3'- -GCCACAUCCACUGCAUCUAGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 47833 0.66 0.950836
Target:  5'- gGGUGgaUGGG-GGCGgggaggucacgGGGUCCgGCGGc -3'
miRNA:   3'- gCCAC--AUCCaCUGCa----------UCUAGGgCGCC- -5'
31094 3' -54.7 NC_006560.1 + 54354 0.69 0.863608
Target:  5'- cCGGgugggGUGGGUGGgGUGGGgaagaCCGgGGg -3'
miRNA:   3'- -GCCa----CAUCCACUgCAUCUag---GGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 66437 0.66 0.950836
Target:  5'- -cGUGUGGGaaGACGUGGGUgugaaccauggCCCGCaGGc -3'
miRNA:   3'- gcCACAUCCa-CUGCAUCUA-----------GGGCG-CC- -5'
31094 3' -54.7 NC_006560.1 + 66516 0.67 0.937554
Target:  5'- cCGGUaguuGgcGGUGACGUGcGUCCgGaCGGc -3'
miRNA:   3'- -GCCA----CauCCACUGCAUcUAGGgC-GCC- -5'
31094 3' -54.7 NC_006560.1 + 71643 0.67 0.937554
Target:  5'- uGGUGgAGGgcggGGCGUGGA---CGCGGg -3'
miRNA:   3'- gCCACaUCCa---CUGCAUCUaggGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.