miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 3' -54.7 NC_006560.1 + 16664 0.65 0.965076
Target:  5'- cCGGUGgcGGUacugcgaGACGaggcgGGAgCCCGCGu -3'
miRNA:   3'- -GCCACauCCA-------CUGCa----UCUaGGGCGCc -5'
31094 3' -54.7 NC_006560.1 + 34911 0.69 0.856015
Target:  5'- gGGUGUGGGgggggggGACG-AGGUUUCGgGGc -3'
miRNA:   3'- gCCACAUCCa------CUGCaUCUAGGGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 54354 0.69 0.863608
Target:  5'- cCGGgugggGUGGGUGGgGUGGGgaagaCCGgGGg -3'
miRNA:   3'- -GCCa----CAUCCACUgCAUCUag---GGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 76365 0.68 0.891878
Target:  5'- --cUGcGGGUGGCGgcGAUCCCgGCGa -3'
miRNA:   3'- gccACaUCCACUGCauCUAGGG-CGCc -5'
31094 3' -54.7 NC_006560.1 + 139225 0.68 0.904688
Target:  5'- uGGUGUcgaAGGcGACGUggucgGGGUCCgGCGc -3'
miRNA:   3'- gCCACA---UCCaCUGCA-----UCUAGGgCGCc -5'
31094 3' -54.7 NC_006560.1 + 28049 0.68 0.91075
Target:  5'- uCGGUGgucuugGGGUcgGugGgcGGUCCUGgGGu -3'
miRNA:   3'- -GCCACa-----UCCA--CugCauCUAGGGCgCC- -5'
31094 3' -54.7 NC_006560.1 + 100450 0.68 0.91075
Target:  5'- aGGUaGUuGGUGACGaggUAGAgcaggcgcUCCuCGCGGg -3'
miRNA:   3'- gCCA-CAuCCACUGC---AUCU--------AGG-GCGCC- -5'
31094 3' -54.7 NC_006560.1 + 27841 0.67 0.922175
Target:  5'- gGGUGccggGGGUGcCGgGGGUcucccgCCCGCGGc -3'
miRNA:   3'- gCCACa---UCCACuGCaUCUA------GGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 110548 0.67 0.936111
Target:  5'- aGGgGUGGGUGGgGccagcgGGGuauauaaaccgcgcUCCCGCGGa -3'
miRNA:   3'- gCCaCAUCCACUgCa-----UCU--------------AGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 3419 0.69 0.848223
Target:  5'- gCGGgcgGgcGGcgGGCGcgGGcgCCCGCGGg -3'
miRNA:   3'- -GCCa--CauCCa-CUGCa-UCuaGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 8544 0.69 0.845848
Target:  5'- uGGUGgGGGUGgggcgacuguggcuGCGgcGAUCCCgucaGCGGa -3'
miRNA:   3'- gCCACaUCCAC--------------UGCauCUAGGG----CGCC- -5'
31094 3' -54.7 NC_006560.1 + 13146 0.7 0.8152
Target:  5'- -----cAGGcgGACGUAGGUCCCcGCGGu -3'
miRNA:   3'- gccacaUCCa-CUGCAUCUAGGG-CGCC- -5'
31094 3' -54.7 NC_006560.1 + 110187 0.76 0.512427
Target:  5'- gCGGgGUAcuacGUGGCGUGGAUCgCGCGGg -3'
miRNA:   3'- -GCCaCAUc---CACUGCAUCUAGgGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 76927 0.72 0.692686
Target:  5'- cCGGgaggagGU-GGUGGCccGGGUCCCGUGGg -3'
miRNA:   3'- -GCCa-----CAuCCACUGcaUCUAGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 109271 0.72 0.702657
Target:  5'- cCGGUGgugcgcGGUcgaGGCGUAGGccagcuccaUCCCGCGGc -3'
miRNA:   3'- -GCCACau----CCA---CUGCAUCU---------AGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 30250 0.72 0.732183
Target:  5'- cCGGU--GGGUGGCG-GGAggCCGCGGg -3'
miRNA:   3'- -GCCAcaUCCACUGCaUCUagGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 125164 0.71 0.760942
Target:  5'- gCGGUGUGGGcgGACGcgcGggCCgGCGGc -3'
miRNA:   3'- -GCCACAUCCa-CUGCau-CuaGGgCGCC- -5'
31094 3' -54.7 NC_006560.1 + 39927 0.71 0.770316
Target:  5'- gGGUGgcUGGGUGGC-UGGggCCCGuCGGu -3'
miRNA:   3'- gCCAC--AUCCACUGcAUCuaGGGC-GCC- -5'
31094 3' -54.7 NC_006560.1 + 14203 0.71 0.77957
Target:  5'- gGGcGUGGGguggucgGGCGgGGcgCCCGCGGu -3'
miRNA:   3'- gCCaCAUCCa------CUGCaUCuaGGGCGCC- -5'
31094 3' -54.7 NC_006560.1 + 34786 0.7 0.8152
Target:  5'- aGGUGUcGGG-GGCugcgGGGUUCCGCGGc -3'
miRNA:   3'- gCCACA-UCCaCUGca--UCUAGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.