Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31103 | 3' | -59.3 | NC_006560.1 | + | 30447 | 1.09 | 0.001382 |
Target: 5'- cCAGAGGAGGAGCAGGAGGAGGAGGAGg -3' miRNA: 3'- -GUCUCCUCCUCGUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36351 | 0.93 | 0.017997 |
Target: 5'- gAGGGGGGGAGgGGGAGGGGGAGGGGg -3' miRNA: 3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36266 | 0.91 | 0.022972 |
Target: 5'- aGGAGGGGGAGgaGGGAGGAGGGGGAGg -3' miRNA: 3'- gUCUCCUCCUCg-UCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 25614 | 0.88 | 0.036349 |
Target: 5'- gAGAGGGGGAG-AGGGGGAGGGGGGGa -3' miRNA: 3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 25638 | 0.87 | 0.046275 |
Target: 5'- gAGGGGGGGAG-GGGGGGAGGGGGAGa -3' miRNA: 3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36314 | 0.87 | 0.046275 |
Target: 5'- gGGAGGGGGAuggGgGGGAGGAGGGGGAGg -3' miRNA: 3'- gUCUCCUCCU---CgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36376 | 0.86 | 0.057284 |
Target: 5'- gGGAGGGGGgaGGgGGGAGGGGGAGGGGg -3' miRNA: 3'- gUCUCCUCC--UCgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 30516 | 0.85 | 0.058827 |
Target: 5'- gCGGGGGAGGGGgAGGGGGcGGGGGGAGa -3' miRNA: 3'- -GUCUCCUCCUCgUCCUCC-UCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 11106 | 0.84 | 0.070813 |
Target: 5'- gCGGAGGAGG-GCGGGGGGGGGGGGc- -3' miRNA: 3'- -GUCUCCUCCuCGUCCUCCUCCUCCuc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 25700 | 0.84 | 0.072707 |
Target: 5'- gAGAGGGGGAGaGGGGGaGAGGGGGAGa -3' miRNA: 3'- gUCUCCUCCUCgUCCUC-CUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 25668 | 0.84 | 0.072707 |
Target: 5'- gAGAGGGGGAGaGGGGGaGAGGGGGAGa -3' miRNA: 3'- gUCUCCUCCUCgUCCUC-CUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36455 | 0.83 | 0.080778 |
Target: 5'- gGGGGGAGGGGggaGGGGGGAGGGGGAu -3' miRNA: 3'- gUCUCCUCCUCg--UCCUCCUCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 33602 | 0.81 | 0.108728 |
Target: 5'- gCAGGGGccggcggagaccaccAGGAGCAGGGGGGGGcGGGGGg -3' miRNA: 3'- -GUCUCC---------------UCCUCGUCCUCCUCC-UCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 33402 | 0.81 | 0.109575 |
Target: 5'- gAGAGGGGGGcGCGGGcggggagcgccggcGGGAGGAGGGGg -3' miRNA: 3'- gUCUCCUCCU-CGUCC--------------UCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 49678 | 0.81 | 0.115972 |
Target: 5'- gCGGGGGAGGGGguGGuggguguguauauGGGGGGGGGGGg -3' miRNA: 3'- -GUCUCCUCCUCguCC-------------UCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 35859 | 0.81 | 0.122402 |
Target: 5'- uCAGAGGgcgccggauGGGAgGgAGGAGGAGGAGGAGc -3' miRNA: 3'- -GUCUCC---------UCCU-CgUCCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 67145 | 0.8 | 0.132163 |
Target: 5'- -cGGGGGGGGGCGGGGuGGGGuGGGGAGa -3' miRNA: 3'- guCUCCUCCUCGUCCU-CCUC-CUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 34396 | 0.8 | 0.139064 |
Target: 5'- gCGGGGGGGGGGguGGGGcggcggccgguGGGGAGGAGg -3' miRNA: 3'- -GUCUCCUCCUCguCCUC-----------CUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 36484 | 0.79 | 0.150036 |
Target: 5'- gGGGGGAGGGGgAuggggggauggGGGGGAGGAGGGGc -3' miRNA: 3'- gUCUCCUCCUCgU-----------CCUCCUCCUCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 33700 | 0.79 | 0.150036 |
Target: 5'- gAGGGGAgGGGGCgGGGAGGcGGGGGAGa -3' miRNA: 3'- gUCUCCU-CCUCG-UCCUCCuCCUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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