Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31103 | 3' | -59.3 | NC_006560.1 | + | 5802 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 5840 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 5878 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 5916 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 5954 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 5991 | 0.79 | 0.165889 |
Target: 5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3' miRNA: 3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6016 | 0.68 | 0.649147 |
Target: 5'- aAGGGcaGGGGGCAGGGGGaAGGGcGAGa -3' miRNA: 3'- gUCUCc-UCCUCGUCCUCC-UCCUcCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6573 | 0.69 | 0.598803 |
Target: 5'- aCGGGGGcucGGGGGCucGGGGGGAcGGGGGc- -3' miRNA: 3'- -GUCUCC---UCCUCG--UCCUCCU-CCUCCuc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6621 | 0.68 | 0.618919 |
Target: 5'- uCGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3' miRNA: 3'- -GUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6672 | 0.68 | 0.659207 |
Target: 5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3' miRNA: 3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6704 | 0.66 | 0.72857 |
Target: 5'- cCGGGGGcucGGGGGCucGGGGGGAccGGGGGc- -3' miRNA: 3'- -GUCUCC---UCCUCG--UCCUCCU--CCUCCuc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6739 | 0.68 | 0.659207 |
Target: 5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3' miRNA: 3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6771 | 0.67 | 0.679255 |
Target: 5'- cCGGGGGcucGGGGGCucGGGGGcucGGGGGGAn -3' miRNA: 3'- -GUCUCC---UCCUCGu-CCUCC---UCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 6804 | 0.7 | 0.519798 |
Target: 5'- cCGGGGGcucGGGGGCucGGGGGGAccgGGGGGAc -3' miRNA: 3'- -GUCUCC---UCCUCG--UCCUCCU---CCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 8197 | 0.72 | 0.436309 |
Target: 5'- uGGGGaGAGGgauucGGCGGGGGGAGG-GGAc -3' miRNA: 3'- gUCUC-CUCC-----UCGUCCUCCUCCuCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 8801 | 0.72 | 0.436309 |
Target: 5'- aCGGAGGGGGcGUcGGAGG-GGAGcGAGu -3' miRNA: 3'- -GUCUCCUCCuCGuCCUCCuCCUC-CUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 8858 | 0.66 | 0.756316 |
Target: 5'- uCGGGcGGGGucggucuGGGguGGGGGAGGcGGGGGg -3' miRNA: 3'- -GUCU-CCUC-------CUCguCCUCCUCC-UCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 9076 | 0.72 | 0.40175 |
Target: 5'- aGGGGGAGGGGCGGcGGGGcgacGGcGGAGc -3' miRNA: 3'- gUCUCCUCCUCGUC-CUCCu---CCuCCUC- -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 9639 | 0.67 | 0.718833 |
Target: 5'- aAGGGGuGGGuGCGGccGGAGGGGGGc -3' miRNA: 3'- gUCUCCuCCU-CGUCcuCCUCCUCCUc -5' |
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31103 | 3' | -59.3 | NC_006560.1 | + | 10219 | 0.68 | 0.639074 |
Target: 5'- uGGGGGuAGGGGUAGGGGuGGGcGGcGGGGg -3' miRNA: 3'- gUCUCC-UCCUCGUCCUC-CUC-CU-CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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