miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 58236 0.66 0.89246
Target:  5'- gCGACGGgGGCcgggggccgccgaGGCGAgccgccggccuCGGCGuCGACGg -3'
miRNA:   3'- -GCUGCUgUCG-------------CUGCU-----------GCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 142681 0.67 0.889198
Target:  5'- gGGCGGCGGCGGaccggagggggcgccCGGcCGGCcGCGGCc -3'
miRNA:   3'- gCUGCUGUCGCU---------------GCU-GCCGcUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 125175 0.67 0.88655
Target:  5'- gGACGcGCGG-GcCGGCGGCGAaaagaGGCGg -3'
miRNA:   3'- gCUGC-UGUCgCuGCUGCCGCUg----CUGC- -5'
31104 3' -56.9 NC_006560.1 + 40440 0.67 0.88655
Target:  5'- aGGCGAUGGCGcACGcgccccaGGgGACGACc -3'
miRNA:   3'- gCUGCUGUCGC-UGCug-----CCgCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 57137 0.67 0.88655
Target:  5'- aCGACcGCGG-GGCGuCGGCGcCGACc -3'
miRNA:   3'- -GCUGcUGUCgCUGCuGCCGCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 126550 0.67 0.88655
Target:  5'- aGGCGaACAGgGccACGAgGGCGAgGGCc -3'
miRNA:   3'- gCUGC-UGUCgC--UGCUgCCGCUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 49347 0.67 0.88655
Target:  5'- gGACGACuuuGaccuGACGcugcuCGGgGACGACGa -3'
miRNA:   3'- gCUGCUGu--Cg---CUGCu----GCCgCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 16359 0.67 0.88655
Target:  5'- gCGACGGCcacggAGCGAgGGggggcaUGGCGGCG-CGg -3'
miRNA:   3'- -GCUGCUG-----UCGCUgCU------GCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 83781 0.67 0.88655
Target:  5'- aCGGCcGCAGCcGCGGCcgcacgGGCGGCGAg- -3'
miRNA:   3'- -GCUGcUGUCGcUGCUG------CCGCUGCUgc -5'
31104 3' -56.9 NC_006560.1 + 26090 0.67 0.88655
Target:  5'- gGGCGGCccGGCG-CGGCGGgGGCuucGCGg -3'
miRNA:   3'- gCUGCUG--UCGCuGCUGCCgCUGc--UGC- -5'
31104 3' -56.9 NC_006560.1 + 51977 0.67 0.88655
Target:  5'- gGGCGGCgGGCGGCGggccugccggcGCGGUGACcGCc -3'
miRNA:   3'- gCUGCUG-UCGCUGC-----------UGCCGCUGcUGc -5'
31104 3' -56.9 NC_006560.1 + 11367 0.67 0.88655
Target:  5'- gGGcCGGguGCGGcCGGCGcCGACGACa -3'
miRNA:   3'- gCU-GCUguCGCU-GCUGCcGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 52812 0.67 0.88655
Target:  5'- cCGACGACcccugccgccccAGCGcCGAcaCGGCGcuGCGGCu -3'
miRNA:   3'- -GCUGCUG------------UCGCuGCU--GCCGC--UGCUGc -5'
31104 3' -56.9 NC_006560.1 + 4390 0.67 0.88655
Target:  5'- uGAUGAgGGCGuACuGGCGcGCGGCGuCGc -3'
miRNA:   3'- gCUGCUgUCGC-UG-CUGC-CGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 130609 0.67 0.88655
Target:  5'- gCGGcCGGCcGCG-CGGCuGGCGugGGCc -3'
miRNA:   3'- -GCU-GCUGuCGCuGCUG-CCGCugCUGc -5'
31104 3' -56.9 NC_006560.1 + 51451 0.67 0.882515
Target:  5'- uGGCGACGGUcGCGcuccgccacgcccgcGCgGGCGGCGGCc -3'
miRNA:   3'- gCUGCUGUCGcUGC---------------UG-CCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 55255 0.67 0.879783
Target:  5'- cCGAUcGCGGCcGCGgaccccGCGGCGACGcCGg -3'
miRNA:   3'- -GCUGcUGUCGcUGC------UGCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 101809 0.67 0.879783
Target:  5'- uGGCGgaGCAGCGccGCGAccaCGGCGugGcccGCGa -3'
miRNA:   3'- gCUGC--UGUCGC--UGCU---GCCGCugC---UGC- -5'
31104 3' -56.9 NC_006560.1 + 116115 0.67 0.879783
Target:  5'- gGGCGGCGcGCG-UGAUGGgGGCGaACGc -3'
miRNA:   3'- gCUGCUGU-CGCuGCUGCCgCUGC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 129069 0.67 0.879783
Target:  5'- -cGCGAgCuGCG-CGGCGGCGAcccCGGCGu -3'
miRNA:   3'- gcUGCU-GuCGCuGCUGCCGCU---GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.