miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 30187 1.08 0.003829
Target:  5'- gCGACGACAGCGACGACGGCGACGACGc -3'
miRNA:   3'- -GCUGCUGUCGCUGCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 20936 0.95 0.027858
Target:  5'- cCGGCGGCGGCGGCGACGGCGuuuGCGGCGg -3'
miRNA:   3'- -GCUGCUGUCGCUGCUGCCGC---UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 4872 0.89 0.063133
Target:  5'- gCGuCGACGGCGGCGGCGGCGcCGGCGg -3'
miRNA:   3'- -GCuGCUGUCGCUGCUGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3217 0.89 0.071916
Target:  5'- uCGAgGGCGGCGGCGGCgGGCGGCGGCGu -3'
miRNA:   3'- -GCUgCUGUCGCUGCUG-CCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 4749 0.88 0.084009
Target:  5'- uCGGCGGCGGCccGCGGCGGCGGCGGCGc -3'
miRNA:   3'- -GCUGCUGUCGc-UGCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 59496 0.87 0.093124
Target:  5'- gGACGGCGGUGugGcCGGUGACGACGa -3'
miRNA:   3'- gCUGCUGUCGCugCuGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3616 0.86 0.103171
Target:  5'- cCGGCGACGaggcccacggcGCGcACGGCGGCGACGGCGg -3'
miRNA:   3'- -GCUGCUGU-----------CGC-UGCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2696 0.86 0.105838
Target:  5'- aCGACGACgaGGCGGCGGcCGGCGGCGGCc -3'
miRNA:   3'- -GCUGCUG--UCGCUGCU-GCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 5270 0.86 0.10857
Target:  5'- gCGGCGGCGGCGGCGAgguCGGCGuCGGCGu -3'
miRNA:   3'- -GCUGCUGUCGCUGCU---GCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 5184 0.85 0.114232
Target:  5'- gCGGCGACGGCGGCcccGACGGCGGgGACa -3'
miRNA:   3'- -GCUGCUGUCGCUG---CUGCCGCUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 22350 0.85 0.12017
Target:  5'- gCGGCGGgGGaggagGACGACGGCGGCGACGg -3'
miRNA:   3'- -GCUGCUgUCg----CUGCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 4159 0.84 0.143279
Target:  5'- uGGCcACGGCGGCGGCGGCGugGGCc -3'
miRNA:   3'- gCUGcUGUCGCUGCUGCCGCugCUGc -5'
31104 3' -56.9 NC_006560.1 + 30214 0.84 0.143279
Target:  5'- cCGAgGACAGCGACGACacCGACGACGa -3'
miRNA:   3'- -GCUgCUGUCGCUGCUGccGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 4024 0.83 0.162202
Target:  5'- gGGCGGCGGCGGCGucccGgGGCGGCGGCGc -3'
miRNA:   3'- gCUGCUGUCGCUGC----UgCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 21261 0.83 0.166248
Target:  5'- aGGCG-CGGUGAgGGCGGCGGCGGCGc -3'
miRNA:   3'- gCUGCuGUCGCUgCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3885 0.82 0.174611
Target:  5'- -cGCGGCGGCGuCGGCGGCGuCGGCGg -3'
miRNA:   3'- gcUGCUGUCGCuGCUGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 131847 0.82 0.178932
Target:  5'- gCGGCGGCGGCGGCGACG-CGGCGcGCGc -3'
miRNA:   3'- -GCUGCUGUCGCUGCUGCcGCUGC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 12020 0.82 0.197175
Target:  5'- aGGCGACGGCGugG-CGGCGGgGGCa -3'
miRNA:   3'- gCUGCUGUCGCugCuGCCGCUgCUGc -5'
31104 3' -56.9 NC_006560.1 + 98428 0.81 0.201983
Target:  5'- gCGACGGCgcgccgcuGGCgGGCGGCGGCGAgGACGg -3'
miRNA:   3'- -GCUGCUG--------UCG-CUGCUGCCGCUgCUGC- -5'
31104 3' -56.9 NC_006560.1 + 116522 0.81 0.201983
Target:  5'- uCGGCGugGaggcggGCGGCGAUGGCGACGGCc -3'
miRNA:   3'- -GCUGCugU------CGCUGCUGCCGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.