miRNA display CGI


Results 1 - 20 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 17 0.66 0.893106
Target:  5'- cCGGCGG-GGCGGuuCGGCGGCGGgGGgGg -3'
miRNA:   3'- -GCUGCUgUCGCU--GCUGCCGCUgCUgC- -5'
31104 3' -56.9 NC_006560.1 + 1882 0.71 0.660096
Target:  5'- gGGCGGgGGUcgcgGGCGGCGGCGcCGGCu -3'
miRNA:   3'- gCUGCUgUCG----CUGCUGCCGCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 2007 0.74 0.522698
Target:  5'- gGGCGGCGGCGuccuCGGCGuCGGCGa -3'
miRNA:   3'- gCUGCUGUCGCugcuGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2051 0.75 0.457902
Target:  5'- cCGGCGGCccAGCGcACGcGCGGCGcgGCGGCGg -3'
miRNA:   3'- -GCUGCUG--UCGC-UGC-UGCCGC--UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2102 0.71 0.650189
Target:  5'- uCGGCGcGCAGC-ACGAgCGGCG-CGGCGu -3'
miRNA:   3'- -GCUGC-UGUCGcUGCU-GCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2312 0.73 0.540911
Target:  5'- cCGGCGGCGGCcgccucgcgcgcgGGCGAguCGGCGGCG-CGg -3'
miRNA:   3'- -GCUGCUGUCG-------------CUGCU--GCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 2391 0.78 0.320937
Target:  5'- gCGGCGGCAGCGGC-ACGGCGGUGuCGg -3'
miRNA:   3'- -GCUGCUGUCGCUGcUGCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 2457 0.71 0.689656
Target:  5'- -cGCGGCccaGGCG-CGGCGGCGGCG-CGu -3'
miRNA:   3'- gcUGCUG---UCGCuGCUGCCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 2538 0.66 0.917152
Target:  5'- aGACG-CGGCcggaGGCGAgcaCGGCG-CGGCGc -3'
miRNA:   3'- gCUGCuGUCG----CUGCU---GCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2639 0.78 0.328087
Target:  5'- uGGCGGCGcGCGACGACGGgccCGuCGGCGg -3'
miRNA:   3'- gCUGCUGU-CGCUGCUGCC---GCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 2696 0.86 0.105838
Target:  5'- aCGACGACgaGGCGGCGGcCGGCGGCGGCc -3'
miRNA:   3'- -GCUGCUG--UCGCUGCU-GCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 3004 0.69 0.800732
Target:  5'- uCGGgGACcuGGCGcauccagGCGGCGGCG-CGGCGc -3'
miRNA:   3'- -GCUgCUG--UCGC-------UGCUGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3217 0.89 0.071916
Target:  5'- uCGAgGGCGGCGGCGGCgGGCGGCGGCGu -3'
miRNA:   3'- -GCUgCUGUCGCUGCUG-CCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3341 0.75 0.475998
Target:  5'- gGGCGGCGuCGGCGuCGGCGuCGGCGu -3'
miRNA:   3'- gCUGCUGUcGCUGCuGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3482 0.76 0.414348
Target:  5'- gGGCGGCGuCGGCGuCGGCGuCGGCGg -3'
miRNA:   3'- gCUGCUGUcGCUGCuGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3542 0.78 0.328087
Target:  5'- aGAgcaGGuCGGCGGCGGCGGCGcCGACGg -3'
miRNA:   3'- gCUg--CU-GUCGCUGCUGCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3593 0.68 0.810184
Target:  5'- gGGCcaGCAGCGGCG-CGGCGGCGn-- -3'
miRNA:   3'- gCUGc-UGUCGCUGCuGCCGCUGCugc -5'
31104 3' -56.9 NC_006560.1 + 3616 0.86 0.103171
Target:  5'- cCGGCGACGaggcccacggcGCGcACGGCGGCGACGGCGg -3'
miRNA:   3'- -GCUGCUGU-----------CGC-UGCUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3748 0.74 0.503787
Target:  5'- gGGCG-CGGCGcgggcGCGGCGGCGccgcGCGGCGg -3'
miRNA:   3'- gCUGCuGUCGC-----UGCUGCCGC----UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 3841 0.66 0.911472
Target:  5'- uCGACGA--GCGccuccAUGACGGCG-CGGCa -3'
miRNA:   3'- -GCUGCUguCGC-----UGCUGCCGCuGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.