miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 100795 0.66 0.949018
Target:  5'- gGGCauCGGgGCCGuCGGCGGgGGCCAu -3'
miRNA:   3'- -UCGcuGCUgUGGCuGCUGCUgUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 52255 0.66 0.952714
Target:  5'- cGCGGCG-CACCGccccgaugcgggcGCGGCGuCGACg- -3'
miRNA:   3'- uCGCUGCuGUGGC-------------UGCUGCuGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 74727 0.66 0.949018
Target:  5'- gGGCGGCccuggagcacccGACccCCGAC-ACGGCGGCCGc -3'
miRNA:   3'- -UCGCUG------------CUGu-GGCUGcUGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 49868 0.66 0.944692
Target:  5'- cGCG-CGACACCGAC--CGGCAGauCCu -3'
miRNA:   3'- uCGCuGCUGUGGCUGcuGCUGUU--GGu -5'
31104 5' -54.7 NC_006560.1 + 70310 0.66 0.949018
Target:  5'- gAGCGACGgggagcgcguguACGCCGugGuCGGggaggccccCGACCGc -3'
miRNA:   3'- -UCGCUGC------------UGUGGCugCuGCU---------GUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 5724 0.66 0.956981
Target:  5'- cGGcCGGCGGCGCCGccCGuCGAgGAUCGc -3'
miRNA:   3'- -UC-GCUGCUGUGGCu-GCuGCUgUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 58234 0.66 0.956981
Target:  5'- gAGCGACGGgggccgggggcCGCCGA-GGCGAgCcGCCGg -3'
miRNA:   3'- -UCGCUGCU-----------GUGGCUgCUGCU-GuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 71464 0.66 0.939664
Target:  5'- cGCGAUGGCGCCGAgGGgggaucgcgggauCGugGucACCGg -3'
miRNA:   3'- uCGCUGCUGUGGCUgCU-------------GCugU--UGGU- -5'
31104 5' -54.7 NC_006560.1 + 145525 0.66 0.954687
Target:  5'- gGGCGGgccucgacccgcccuCGGCGCCGGgGACGccCGGCCc -3'
miRNA:   3'- -UCGCU---------------GCUGUGGCUgCUGCu-GUUGGu -5'
31104 5' -54.7 NC_006560.1 + 66983 0.66 0.953113
Target:  5'- gAGCGugGugGCCGucUGGCG-CGGCg- -3'
miRNA:   3'- -UCGCugCugUGGCu-GCUGCuGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 71903 0.66 0.948596
Target:  5'- uGGgGAUGGgGCucuaccgCGACGGCGACGACg- -3'
miRNA:   3'- -UCgCUGCUgUG-------GCUGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 111819 0.66 0.953113
Target:  5'- cGCGGaccugGugACCGuCGGCGACAAgCu -3'
miRNA:   3'- uCGCUg----CugUGGCuGCUGCUGUUgGu -5'
31104 5' -54.7 NC_006560.1 + 109854 0.66 0.953113
Target:  5'- cGCGACGACAUCG-CGccaAUGGCGcuCCGg -3'
miRNA:   3'- uCGCUGCUGUGGCuGC---UGCUGUu-GGU- -5'
31104 5' -54.7 NC_006560.1 + 4699 0.66 0.949018
Target:  5'- cGGCGGCGcGCGCgCGGCGGCG-CucGCUg -3'
miRNA:   3'- -UCGCUGC-UGUG-GCUGCUGCuGu-UGGu -5'
31104 5' -54.7 NC_006560.1 + 38132 0.66 0.949018
Target:  5'- cGC-ACGACGCCGGCGuuuUGugGGCa- -3'
miRNA:   3'- uCGcUGCUGUGGCUGCu--GCugUUGgu -5'
31104 5' -54.7 NC_006560.1 + 126910 0.66 0.944692
Target:  5'- gGGCcccACGACGCgGugGugGGCcggGGCCGc -3'
miRNA:   3'- -UCGc--UGCUGUGgCugCugCUG---UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 146085 0.66 0.953113
Target:  5'- gAGCGGCGggcccACugCGGCuccGCGuCGGCCAg -3'
miRNA:   3'- -UCGCUGC-----UGugGCUGc--UGCuGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 24915 0.66 0.940132
Target:  5'- cGCGcCGcCGCCGcgccugggccGCGGCGGCAACg- -3'
miRNA:   3'- uCGCuGCuGUGGC----------UGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 78804 0.66 0.958465
Target:  5'- cGGCGugGAgguucucgccgggcuCGCCG-CGAagGACGACCc -3'
miRNA:   3'- -UCGCugCU---------------GUGGCuGCUg-CUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 120388 0.66 0.940132
Target:  5'- cAGCG-CGuccuggcCAUCGaggGCGACGGCAGCCu -3'
miRNA:   3'- -UCGCuGCu------GUGGC---UGCUGCUGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.