miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 49868 0.66 0.944692
Target:  5'- cGCG-CGACACCGAC--CGGCAGauCCu -3'
miRNA:   3'- uCGCuGCUGUGGCUGcuGCUGUU--GGu -5'
31104 5' -54.7 NC_006560.1 + 41753 0.66 0.944692
Target:  5'- cGcCGGCGGCACC-ACGAacacCGGCAGCa- -3'
miRNA:   3'- uC-GCUGCUGUGGcUGCU----GCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 53861 0.66 0.949018
Target:  5'- cGCGccucgcCGACGCCccgGACGACGACCc -3'
miRNA:   3'- uCGCu-----GCUGUGGcugCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 50888 0.66 0.940132
Target:  5'- uGCGcCGGCAgucgcccgcCUGACGGCGcuGCAGCCc -3'
miRNA:   3'- uCGCuGCUGU---------GGCUGCUGC--UGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 63604 0.66 0.944692
Target:  5'- uGGCcGCGGCGCgcACGAUGGCAuagGCCAc -3'
miRNA:   3'- -UCGcUGCUGUGgcUGCUGCUGU---UGGU- -5'
31104 5' -54.7 NC_006560.1 + 39990 0.66 0.944692
Target:  5'- cGCcGCGACuCCGGCGACagGACGcgaucGCCGc -3'
miRNA:   3'- uCGcUGCUGuGGCUGCUG--CUGU-----UGGU- -5'
31104 5' -54.7 NC_006560.1 + 103981 0.66 0.944692
Target:  5'- gGGCGAgaucuCGGuCGCCGagGCGGCGAUggcaauGACCAg -3'
miRNA:   3'- -UCGCU-----GCU-GUGGC--UGCUGCUG------UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 28334 0.66 0.938719
Target:  5'- gGGgGGCGGCGCCGcccggcuccuccccGCGGCGGgGaggaGCCGc -3'
miRNA:   3'- -UCgCUGCUGUGGC--------------UGCUGCUgU----UGGU- -5'
31104 5' -54.7 NC_006560.1 + 71464 0.66 0.939664
Target:  5'- cGCGAUGGCGCCGAgGGgggaucgcgggauCGugGucACCGg -3'
miRNA:   3'- uCGCUGCUGUGGCUgCU-------------GCugU--UGGU- -5'
31104 5' -54.7 NC_006560.1 + 24915 0.66 0.940132
Target:  5'- cGCGcCGcCGCCGcgccugggccGCGGCGGCAACg- -3'
miRNA:   3'- uCGCuGCuGUGGC----------UGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 71903 0.66 0.948596
Target:  5'- uGGgGAUGGgGCucuaccgCGACGGCGACGACg- -3'
miRNA:   3'- -UCgCUGCUgUG-------GCUGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 46924 0.66 0.949018
Target:  5'- ---cACGGCACCGACGAgGucgaGGCCGa -3'
miRNA:   3'- ucgcUGCUGUGGCUGCUgCug--UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 78804 0.66 0.958465
Target:  5'- cGGCGugGAgguucucgccgggcuCGCCG-CGAagGACGACCc -3'
miRNA:   3'- -UCGCugCU---------------GUGGCuGCUg-CUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 120388 0.66 0.940132
Target:  5'- cAGCG-CGuccuggcCAUCGaggGCGACGGCAGCCu -3'
miRNA:   3'- -UCGCuGCu------GUGGC---UGCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 14663 0.66 0.944692
Target:  5'- cGGUGAUGAUcacgaACgCGAgccCGugGGCGGCCAg -3'
miRNA:   3'- -UCGCUGCUG-----UG-GCU---GCugCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 10748 0.66 0.944692
Target:  5'- cGGCcGCGACGCCGACccacgccGCGAgAAuCCAc -3'
miRNA:   3'- -UCGcUGCUGUGGCUGc------UGCUgUU-GGU- -5'
31104 5' -54.7 NC_006560.1 + 97201 0.66 0.944692
Target:  5'- gGGCG-CGAgGCCcGCGAggcCGugGACCGc -3'
miRNA:   3'- -UCGCuGCUgUGGcUGCU---GCugUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 38132 0.66 0.949018
Target:  5'- cGC-ACGACGCCGGCGuuuUGugGGCa- -3'
miRNA:   3'- uCGcUGCUGUGGCUGCu--GCugUUGgu -5'
31104 5' -54.7 NC_006560.1 + 15033 0.66 0.949018
Target:  5'- uGCGGCGucggagacucGCGCCgGGgGGCGACGGCg- -3'
miRNA:   3'- uCGCUGC----------UGUGG-CUgCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 126910 0.66 0.944692
Target:  5'- gGGCcccACGACGCgGugGugGGCcggGGCCGc -3'
miRNA:   3'- -UCGc--UGCUGUGgCugCugCUG---UUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.