Results 1 - 20 of 382 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31104 | 5' | -54.7 | NC_006560.1 | + | 78804 | 0.66 | 0.958465 |
Target: 5'- cGGCGugGAgguucucgccgggcuCGCCG-CGAagGACGACCc -3' miRNA: 3'- -UCGCugCU---------------GUGGCuGCUg-CUGUUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 57473 | 0.81 | 0.262923 |
Target: 5'- cGGCGAUGACGCCGagcGCGACGagaaacaGCGACCGg -3' miRNA: 3'- -UCGCUGCUGUGGC---UGCUGC-------UGUUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 1895 | 0.81 | 0.263548 |
Target: 5'- gGGCGGCGGCGCCGGCuaccaguccucGGCGGCcGCCGg -3' miRNA: 3'- -UCGCUGCUGUGGCUG-----------CUGCUGuUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 2705 | 0.81 | 0.276291 |
Target: 5'- aGGCGGCG--GCCGGCGGCGGCcGCCAg -3' miRNA: 3'- -UCGCUGCugUGGCUGCUGCUGuUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 4882 | 0.8 | 0.289522 |
Target: 5'- cGGCGGCGGCGCCGGCGGgGGCcGCg- -3' miRNA: 3'- -UCGCUGCUGUGGCUGCUgCUGuUGgu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 11218 | 0.8 | 0.310292 |
Target: 5'- cAGCGACGGCACCGcggucuGCGACGGgcGCCGc -3' miRNA: 3'- -UCGCUGCUGUGGC------UGCUGCUguUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 99636 | 0.8 | 0.310292 |
Target: 5'- cGGCGAUGGCGCCGACcagcGCGGCGAUCu -3' miRNA: 3'- -UCGCUGCUGUGGCUGc---UGCUGUUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 2292 | 0.79 | 0.332176 |
Target: 5'- cGCGGCGgaagucgggcGCGCCGGCGGCGGCcGCCu -3' miRNA: 3'- uCGCUGC----------UGUGGCUGCUGCUGuUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 5185 | 0.79 | 0.332176 |
Target: 5'- cGGCGACGGCGgccCCGACGGCGGgGACa- -3' miRNA: 3'- -UCGCUGCUGU---GGCUGCUGCUgUUGgu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 72435 | 0.81 | 0.257357 |
Target: 5'- cGuCGACGAUACCGACGGCGAgGACgGg -3' miRNA: 3'- uC-GCUGCUGUGGCUGCUGCUgUUGgU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 132904 | 0.81 | 0.251286 |
Target: 5'- gGGCGACGuGCggcgGCCGACGGCGGcCAGCCAc -3' miRNA: 3'- -UCGCUGC-UG----UGGCUGCUGCU-GUUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 131531 | 0.82 | 0.245333 |
Target: 5'- aGGCGGCG--GCCGGCGACGugGACCu -3' miRNA: 3'- -UCGCUGCugUGGCUGCUGCugUUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 30185 | 0.91 | 0.067886 |
Target: 5'- cAGCGACGACAgCGACGACGGCGACg- -3' miRNA: 3'- -UCGCUGCUGUgGCUGCUGCUGUUGgu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 117990 | 0.89 | 0.08629 |
Target: 5'- cGCGGCGGCGCCcGCGGCGGCGGCCGa -3' miRNA: 3'- uCGCUGCUGUGGcUGCUGCUGUUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 3606 | 0.88 | 0.103795 |
Target: 5'- cGCGGCGGCGCCGGCGACGAgGcCCAc -3' miRNA: 3'- uCGCUGCUGUGGCUGCUGCUgUuGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 53484 | 0.86 | 0.127874 |
Target: 5'- cGCGGCGGCGCgCGAgGACGACGACCc -3' miRNA: 3'- uCGCUGCUGUG-GCUgCUGCUGUUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 119147 | 0.86 | 0.143231 |
Target: 5'- gGGCGACGACcucccggcgcgcuucGCCGACGcCGACGGCCAc -3' miRNA: 3'- -UCGCUGCUG---------------UGGCUGCuGCUGUUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 76372 | 0.83 | 0.192069 |
Target: 5'- uGGCGGCGAUcCCGGCGACcGCGGCCAa -3' miRNA: 3'- -UCGCUGCUGuGGCUGCUGcUGUUGGU- -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 4732 | 0.82 | 0.217309 |
Target: 5'- cGGCGGCGACGcCCGucuCGGCGGCGGCCc -3' miRNA: 3'- -UCGCUGCUGU-GGCu--GCUGCUGUUGGu -5' |
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31104 | 5' | -54.7 | NC_006560.1 | + | 11892 | 0.82 | 0.239498 |
Target: 5'- gGGCGACGuACagGCCGACGACGGCGuCCGc -3' miRNA: 3'- -UCGCUGC-UG--UGGCUGCUGCUGUuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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