miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 30221 1.08 0.004888
Target:  5'- cAGCGACGACACCGACGACGACAACCAc -3'
miRNA:   3'- -UCGCUGCUGUGGCUGCUGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 30185 0.91 0.067886
Target:  5'- cAGCGACGACAgCGACGACGGCGACg- -3'
miRNA:   3'- -UCGCUGCUGUgGCUGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 117990 0.89 0.08629
Target:  5'- cGCGGCGGCGCCcGCGGCGGCGGCCGa -3'
miRNA:   3'- uCGCUGCUGUGGcUGCUGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 3606 0.88 0.103795
Target:  5'- cGCGGCGGCGCCGGCGACGAgGcCCAc -3'
miRNA:   3'- uCGCUGCUGUGGCUGCUGCUgUuGGU- -5'
31104 5' -54.7 NC_006560.1 + 53484 0.86 0.127874
Target:  5'- cGCGGCGGCGCgCGAgGACGACGACCc -3'
miRNA:   3'- uCGCUGCUGUG-GCUgCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 119147 0.86 0.143231
Target:  5'- gGGCGACGACcucccggcgcgcuucGCCGACGcCGACGGCCAc -3'
miRNA:   3'- -UCGCUGCUG---------------UGGCUGCuGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 76372 0.83 0.192069
Target:  5'- uGGCGGCGAUcCCGGCGACcGCGGCCAa -3'
miRNA:   3'- -UCGCUGCUGuGGCUGCUGcUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 4732 0.82 0.217309
Target:  5'- cGGCGGCGACGcCCGucuCGGCGGCGGCCc -3'
miRNA:   3'- -UCGCUGCUGU-GGCu--GCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 11892 0.82 0.239498
Target:  5'- gGGCGACGuACagGCCGACGACGGCGuCCGc -3'
miRNA:   3'- -UCGCUGC-UG--UGGCUGCUGCUGUuGGU- -5'
31104 5' -54.7 NC_006560.1 + 131531 0.82 0.245333
Target:  5'- aGGCGGCG--GCCGGCGACGugGACCu -3'
miRNA:   3'- -UCGCUGCugUGGCUGCUGCugUUGGu -5'
31104 5' -54.7 NC_006560.1 + 132904 0.81 0.251286
Target:  5'- gGGCGACGuGCggcgGCCGACGGCGGcCAGCCAc -3'
miRNA:   3'- -UCGCUGC-UG----UGGCUGCUGCU-GUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 72435 0.81 0.257357
Target:  5'- cGuCGACGAUACCGACGGCGAgGACgGg -3'
miRNA:   3'- uC-GCUGCUGUGGCUGCUGCUgUUGgU- -5'
31104 5' -54.7 NC_006560.1 + 57473 0.81 0.262923
Target:  5'- cGGCGAUGACGCCGagcGCGACGagaaacaGCGACCGg -3'
miRNA:   3'- -UCGCUGCUGUGGC---UGCUGC-------UGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 1895 0.81 0.263548
Target:  5'- gGGCGGCGGCGCCGGCuaccaguccucGGCGGCcGCCGg -3'
miRNA:   3'- -UCGCUGCUGUGGCUG-----------CUGCUGuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 2705 0.81 0.276291
Target:  5'- aGGCGGCG--GCCGGCGGCGGCcGCCAg -3'
miRNA:   3'- -UCGCUGCugUGGCUGCUGCUGuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 4882 0.8 0.289522
Target:  5'- cGGCGGCGGCGCCGGCGGgGGCcGCg- -3'
miRNA:   3'- -UCGCUGCUGUGGCUGCUgCUGuUGgu -5'
31104 5' -54.7 NC_006560.1 + 99636 0.8 0.310292
Target:  5'- cGGCGAUGGCGCCGACcagcGCGGCGAUCu -3'
miRNA:   3'- -UCGCUGCUGUGGCUGc---UGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 11218 0.8 0.310292
Target:  5'- cAGCGACGGCACCGcggucuGCGACGGgcGCCGc -3'
miRNA:   3'- -UCGCUGCUGUGGC------UGCUGCUguUGGU- -5'
31104 5' -54.7 NC_006560.1 + 2292 0.79 0.332176
Target:  5'- cGCGGCGgaagucgggcGCGCCGGCGGCGGCcGCCu -3'
miRNA:   3'- uCGCUGC----------UGUGGCUGCUGCUGuUGGu -5'
31104 5' -54.7 NC_006560.1 + 5185 0.79 0.332176
Target:  5'- cGGCGACGGCGgccCCGACGGCGGgGACa- -3'
miRNA:   3'- -UCGCUGCUGU---GGCUGCUGCUgUUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.