miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 513 0.68 0.907803
Target:  5'- cGCcACGGgCGCCgGGgGGCGGCGGCCGg -3'
miRNA:   3'- uCGcUGCU-GUGG-CUgCUGCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 1895 0.81 0.263548
Target:  5'- gGGCGGCGGCGCCGGCuaccaguccucGGCGGCcGCCGg -3'
miRNA:   3'- -UCGCUGCUGUGGCUG-----------CUGCUGuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 2007 0.74 0.614875
Target:  5'- gGGCGGCGGCGuccUCGGCGuCGGCGAgCAg -3'
miRNA:   3'- -UCGCUGCUGU---GGCUGCuGCUGUUgGU- -5'
31104 5' -54.7 NC_006560.1 + 2292 0.79 0.332176
Target:  5'- cGCGGCGgaagucgggcGCGCCGGCGGCGGCcGCCu -3'
miRNA:   3'- uCGCUGC----------UGUGGCUGCUGCUGuUGGu -5'
31104 5' -54.7 NC_006560.1 + 2376 0.71 0.774042
Target:  5'- cGCGGCGGUACuCGcGCGGCGGCAGCg- -3'
miRNA:   3'- uCGCUGCUGUG-GC-UGCUGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 2637 0.74 0.574272
Target:  5'- cGUGGCGGCGCgCGACGACGG--GCCc -3'
miRNA:   3'- uCGCUGCUGUG-GCUGCUGCUguUGGu -5'
31104 5' -54.7 NC_006560.1 + 2705 0.81 0.276291
Target:  5'- aGGCGGCG--GCCGGCGGCGGCcGCCAg -3'
miRNA:   3'- -UCGCUGCugUGGCUGCUGCUGuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 2744 0.72 0.706197
Target:  5'- -uCGACGGCGCCGGCGAa---GGCCAg -3'
miRNA:   3'- ucGCUGCUGUGGCUGCUgcugUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 3050 0.69 0.851818
Target:  5'- aGGCGcggaGCGGC-CCGAgGGCG-CGGCCGg -3'
miRNA:   3'- -UCGC----UGCUGuGGCUgCUGCuGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 3221 0.76 0.457801
Target:  5'- gGGCGGCGGCgGCgGGCGGCGGCGugUg -3'
miRNA:   3'- -UCGCUGCUG-UGgCUGCUGCUGUugGu -5'
31104 5' -54.7 NC_006560.1 + 3356 0.67 0.913784
Target:  5'- cGGCGuCGGCGUCGGCGuCGGCGGgCGg -3'
miRNA:   3'- -UCGCuGCUGUGGCUGCuGCUGUUgGU- -5'
31104 5' -54.7 NC_006560.1 + 3485 0.69 0.84387
Target:  5'- cGGCGuCGGCGUCGGCGuCGGCGGCg- -3'
miRNA:   3'- -UCGCuGCUGUGGCUGCuGCUGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 3554 0.79 0.339719
Target:  5'- cGGCGGCGGCGCCGACGgaGCG-CAccuGCCGc -3'
miRNA:   3'- -UCGCUGCUGUGGCUGC--UGCuGU---UGGU- -5'
31104 5' -54.7 NC_006560.1 + 3606 0.88 0.103795
Target:  5'- cGCGGCGGCGCCGGCGACGAgGcCCAc -3'
miRNA:   3'- uCGCUGCUGUGGCUGCUGCUgUuGGU- -5'
31104 5' -54.7 NC_006560.1 + 3632 0.76 0.457801
Target:  5'- cGGCG-CGcACGgCGGCGACGGCGGCCu -3'
miRNA:   3'- -UCGCuGC-UGUgGCUGCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 3762 0.78 0.363085
Target:  5'- cGCGGCGGCGCCGcGCGGCGG-GACCGc -3'
miRNA:   3'- uCGCUGCUGUGGC-UGCUGCUgUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 3815 0.67 0.919529
Target:  5'- cGGCGGCGAggucgcCGCCGAagcccuCGACGAgcGCCu -3'
miRNA:   3'- -UCGCUGCU------GUGGCU------GCUGCUguUGGu -5'
31104 5' -54.7 NC_006560.1 + 3885 0.74 0.574272
Target:  5'- cGCGGCGGCGUCGGCGGCGuCGGCg- -3'
miRNA:   3'- uCGCUGCUGUGGCUGCUGCuGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 3935 0.76 0.505008
Target:  5'- cGGgGGCGGCGCCGcggucggcgGCGAgGGCGGCCGc -3'
miRNA:   3'- -UCgCUGCUGUGGC---------UGCUgCUGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 3973 0.71 0.73583
Target:  5'- aGGCGGCG-CugCG-CGGCGACAcGCCc -3'
miRNA:   3'- -UCGCUGCuGugGCuGCUGCUGU-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.