miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 3' -52.6 NC_006560.1 + 4871 0.69 0.884382
Target:  5'- cGCguc--GACGGCGGCGGCgGCgccGGCg -3'
miRNA:   3'- aUGaaacuUUGUCGCCGUCGgCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 5161 0.71 0.810103
Target:  5'- gGCcg-GGGccGCGGgGGCgGGCCGCGGCg -3'
miRNA:   3'- aUGaaaCUU--UGUCgCCG-UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 5261 0.71 0.781873
Target:  5'- cGCgagGAcGCGGCGGCGGCgGCgaggucGGCg -3'
miRNA:   3'- aUGaaaCUuUGUCGCCGUCGgCG------UCG- -5'
31115 3' -52.6 NC_006560.1 + 5311 0.67 0.952966
Target:  5'- cGCcgcgUGcGACGGCGGCGGCCccuccgggucCGGCg -3'
miRNA:   3'- aUGaa--ACuUUGUCGCCGUCGGc---------GUCG- -5'
31115 3' -52.6 NC_006560.1 + 5494 0.78 0.405471
Target:  5'- gGCga-GGGuCGGCGGCGGUCGCGGCg -3'
miRNA:   3'- aUGaaaCUUuGUCGCCGUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 5520 0.67 0.952966
Target:  5'- -----aGGGuCGGCGGCGGUCGC-GCu -3'
miRNA:   3'- augaaaCUUuGUCGCCGUCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 5667 0.7 0.82806
Target:  5'- cGCcccggGgcGCGGgGGCGGCCgGCGGCg -3'
miRNA:   3'- aUGaaa--CuuUGUCgCCGUCGG-CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 6410 0.67 0.934234
Target:  5'- ---------cCGGCGGC-GCCGCGGCc -3'
miRNA:   3'- augaaacuuuGUCGCCGuCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 8540 0.66 0.960823
Target:  5'- cGCguggUGggGguGgGGCgacuguGGCUGCGGCg -3'
miRNA:   3'- aUGaa--ACuuUguCgCCG------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 8650 0.67 0.948665
Target:  5'- cGCgacGAAGcCGGCGGCccgcguucgccGGCgGCGGCg -3'
miRNA:   3'- aUGaaaCUUU-GUCGCCG-----------UCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 9096 0.71 0.800856
Target:  5'- gACggcGGAGCGcGCGcGCGGCgCGCGGCa -3'
miRNA:   3'- aUGaaaCUUUGU-CGC-CGUCG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 9541 0.66 0.96439
Target:  5'- cACggaGAGGcCGGCGGCGGCCaGCcccagGGCc -3'
miRNA:   3'- aUGaaaCUUU-GUCGCCGUCGG-CG-----UCG- -5'
31115 3' -52.6 NC_006560.1 + 9881 0.66 0.970828
Target:  5'- -----cGggGgGGCGGCAcGCUGCgcgAGCa -3'
miRNA:   3'- augaaaCuuUgUCGCCGU-CGGCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 9967 0.71 0.772156
Target:  5'- gGCgggcGAGCGGCcucgGGCAGCCGCGGg -3'
miRNA:   3'- aUGaaacUUUGUCG----CCGUCGGCGUCg -5'
31115 3' -52.6 NC_006560.1 + 10233 0.68 0.911362
Target:  5'- -----gGGGugGGCGGCgggggcgcgGGUCGCGGCg -3'
miRNA:   3'- augaaaCUUugUCGCCG---------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 10586 0.66 0.96992
Target:  5'- -----cGggGgGGUGGagggagacccacgaCGGCCGCAGCg -3'
miRNA:   3'- augaaaCuuUgUCGCC--------------GUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 12027 0.68 0.91747
Target:  5'- gGCgugGcgGCGGgGGCAcGCCGuCAGCu -3'
miRNA:   3'- aUGaaaCuuUGUCgCCGU-CGGC-GUCG- -5'
31115 3' -52.6 NC_006560.1 + 12069 0.73 0.700915
Target:  5'- cACgcgGggGCAGCGGUcGCC-CGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCGCCGuCGGcGUCG- -5'
31115 3' -52.6 NC_006560.1 + 12583 0.67 0.939302
Target:  5'- ----cUGggGCAGgcgcacgugcuUGGCGGCCGC-GCg -3'
miRNA:   3'- augaaACuuUGUC-----------GCCGUCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 14061 0.74 0.647923
Target:  5'- cGCUg-GAGACguucuGGCGGCGGCgcgCGCAGCg -3'
miRNA:   3'- aUGAaaCUUUG-----UCGCCGUCG---GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.