miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 3' -52.6 NC_006560.1 + 520 0.75 0.594579
Target:  5'- gGCgccggGggGCGGCGGcCGGCCGC-GCc -3'
miRNA:   3'- aUGaaa--CuuUGUCGCC-GUCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 2043 0.67 0.939302
Target:  5'- -----cGgcGCGGcCGGCGGCC-CAGCg -3'
miRNA:   3'- augaaaCuuUGUC-GCCGUCGGcGUCG- -5'
31115 3' -52.6 NC_006560.1 + 2295 0.7 0.819174
Target:  5'- gGCg--GAAGucgggcgcgcCGGCGGCGGCCGCcucGCg -3'
miRNA:   3'- aUGaaaCUUU----------GUCGCCGUCGGCGu--CG- -5'
31115 3' -52.6 NC_006560.1 + 2332 0.67 0.952966
Target:  5'- cGCgggcGAGuCGGCGGCgcGGCCGUcgAGCg -3'
miRNA:   3'- aUGaaa-CUUuGUCGCCG--UCGGCG--UCG- -5'
31115 3' -52.6 NC_006560.1 + 2383 0.7 0.836753
Target:  5'- gUACUcgc--GCGGCGGCAGCgGCAcgGCg -3'
miRNA:   3'- -AUGAaacuuUGUCGCCGUCGgCGU--CG- -5'
31115 3' -52.6 NC_006560.1 + 2698 0.76 0.511137
Target:  5'- gACgacGAGGCGGCGGcCGGCgGCGGCc -3'
miRNA:   3'- aUGaaaCUUUGUCGCC-GUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3001 0.73 0.669229
Target:  5'- gGCUcgGGGACcuggcgcauccaGGCGGCGGCgcggCGCAGCg -3'
miRNA:   3'- aUGAaaCUUUG------------UCGCCGUCG----GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3071 0.67 0.934234
Target:  5'- cGCggccGGAGCccGGCucgGGCgGGCCGCAGCg -3'
miRNA:   3'- aUGaaa-CUUUG--UCG---CCG-UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3218 0.7 0.845242
Target:  5'- -----cGAgGGCGGCGGCGGCgGgCGGCg -3'
miRNA:   3'- augaaaCU-UUGUCGCCGUCGgC-GUCG- -5'
31115 3' -52.6 NC_006560.1 + 3241 0.66 0.967723
Target:  5'- gGCgugUGGGcgGGCccgGGCGGCgCGCGGCg -3'
miRNA:   3'- aUGaa-ACUUugUCG---CCGUCG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3527 0.7 0.845242
Target:  5'- gGCUcUGGuuccggaagAGCAGguCGGCGGCgGCGGCg -3'
miRNA:   3'- aUGAaACU---------UUGUC--GCCGUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3587 0.74 0.615885
Target:  5'- gGCUgcgGGccAGCAGCGGC-GCgGCGGCg -3'
miRNA:   3'- aUGAaa-CU--UUGUCGCCGuCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 3754 0.71 0.781873
Target:  5'- gGCgcgGgcGCGGCGGC-GCCGCgcGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCGCCGuCGGCG--UCG- -5'
31115 3' -52.6 NC_006560.1 + 3933 0.7 0.845242
Target:  5'- cGCg--GggGCGGCGccGCGGUCgGCGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCGC--CGUCGG-CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4015 0.7 0.836753
Target:  5'- -----cGAGGcCGGgGGCGGCgGCGGCg -3'
miRNA:   3'- augaaaCUUU-GUCgCCGUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4041 0.8 0.345798
Target:  5'- -----cGggGCGGCGGCgcggcgccGGCCGCGGCg -3'
miRNA:   3'- augaaaCuuUGUCGCCG--------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4118 0.69 0.884382
Target:  5'- gGCgagGAAGCccuucuGCGcGCGGUCGUAGCg -3'
miRNA:   3'- aUGaaaCUUUGu-----CGC-CGUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4153 0.66 0.957017
Target:  5'- gGCUcaugGccACGGCGGCGGCgGCgugGGCc -3'
miRNA:   3'- aUGAaa--CuuUGUCGCCGUCGgCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 4687 0.69 0.891503
Target:  5'- cGCgcccgGccACGGCGGCGcGCgCGCGGCg -3'
miRNA:   3'- aUGaaa--CuuUGUCGCCGU-CG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4739 0.73 0.684069
Target:  5'- gACgcccgucuCGGCGGCGGCCcGCGGCg -3'
miRNA:   3'- aUGaaacuuu-GUCGCCGUCGG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.