miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 3' -52.6 NC_006560.1 + 16503 1.11 0.003318
Target:  5'- uUACUUUGAAACAGCGGCAGCCGCAGCa -3'
miRNA:   3'- -AUGAAACUUUGUCGCCGUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 146471 0.8 0.314636
Target:  5'- aGCgg-GggGCggAGCGGCGGCCGCgAGCg -3'
miRNA:   3'- aUGaaaCuuUG--UCGCCGUCGGCG-UCG- -5'
31115 3' -52.6 NC_006560.1 + 99613 0.8 0.329946
Target:  5'- gGCgg-GggGCGGCuGGCGGuCCGCGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCG-CCGUC-GGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 4041 0.8 0.345798
Target:  5'- -----cGggGCGGCGGCgcggcgccGGCCGCGGCg -3'
miRNA:   3'- augaaaCuuUGUCGCCG--------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 130313 0.79 0.370584
Target:  5'- gGCgcgGugGCGGCGGCgcgGGCCGCGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCGCCG---UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 5494 0.78 0.405471
Target:  5'- gGCga-GGGuCGGCGGCGGUCGCGGCg -3'
miRNA:   3'- aUGaaaCUUuGUCGCCGUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 21264 0.78 0.41451
Target:  5'- cGCggUGAgGGCGGCGGCGGC-GCGGCg -3'
miRNA:   3'- aUGaaACU-UUGUCGCCGUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 100486 0.78 0.423672
Target:  5'- -----cGGGACAGCgGGgGGCCGCGGCg -3'
miRNA:   3'- augaaaCUUUGUCG-CCgUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 101784 0.78 0.432955
Target:  5'- cGCcg-GggGCGGCGGCAggacGCCGUGGCg -3'
miRNA:   3'- aUGaaaCuuUGUCGCCGU----CGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 142467 0.78 0.432955
Target:  5'- -----aGguGCGGCGGCGGCCGcCGGCg -3'
miRNA:   3'- augaaaCuuUGUCGCCGUCGGC-GUCG- -5'
31115 3' -52.6 NC_006560.1 + 54667 0.77 0.471225
Target:  5'- cGCg--GggGC-GCGGCAGCCGcCGGCc -3'
miRNA:   3'- aUGaaaCuuUGuCGCCGUCGGC-GUCG- -5'
31115 3' -52.6 NC_006560.1 + 145945 0.76 0.501021
Target:  5'- gGCUgugGAAGCuGCGGCcGCCcaGCAGCg -3'
miRNA:   3'- aUGAaa-CUUUGuCGCCGuCGG--CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 2698 0.76 0.511137
Target:  5'- gACgacGAGGCGGCGGcCGGCgGCGGCc -3'
miRNA:   3'- aUGaaaCUUUGUCGCC-GUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 117996 0.76 0.521338
Target:  5'- gGCgcccGcgGCGGCGGCcgaGGCCGCGGCg -3'
miRNA:   3'- aUGaaa-CuuUGUCGCCG---UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 85572 0.76 0.531617
Target:  5'- gGCUcgGggGCGgggggcGCGGCGGgCGCGGCg -3'
miRNA:   3'- aUGAaaCuuUGU------CGCCGUCgGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 147989 0.76 0.541968
Target:  5'- gGCgucgGAGGCGG-GGCGGUCGCGGCc -3'
miRNA:   3'- aUGaaa-CUUUGUCgCCGUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 62436 0.75 0.562862
Target:  5'- aGCgaggUUGggGCgagAGCGG-GGCCGCGGCg -3'
miRNA:   3'- aUGa---AACuuUG---UCGCCgUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 131165 0.75 0.562862
Target:  5'- gGCUcUG-GGCGGCGGCcGCCGCGGg -3'
miRNA:   3'- aUGAaACuUUGUCGCCGuCGGCGUCg -5'
31115 3' -52.6 NC_006560.1 + 78062 0.75 0.573391
Target:  5'- aGCUggcggcCGGCGGCgcGGCCGCGGCg -3'
miRNA:   3'- aUGAaacuuuGUCGCCG--UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 149913 0.75 0.583966
Target:  5'- -----aGGAACGGCGGcCGGgCGCGGCg -3'
miRNA:   3'- augaaaCUUUGUCGCC-GUCgGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.