miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 3' -52.6 NC_006560.1 + 96658 0.66 0.956623
Target:  5'- gGCgcUGAAGcCGGCcaaGGCcgcgacccgcaccAGCCGCGGCu -3'
miRNA:   3'- aUGaaACUUU-GUCG---CCG-------------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 150042 0.66 0.957017
Target:  5'- gGCgagGAcGACcuccGCGGCGGCCGCGccccGCg -3'
miRNA:   3'- aUGaaaCU-UUGu---CGCCGUCGGCGU----CG- -5'
31115 3' -52.6 NC_006560.1 + 77394 0.66 0.970828
Target:  5'- cGCUgcUGAuGCGGCccgaGGCGGCgCGCGcGCg -3'
miRNA:   3'- aUGAa-ACUuUGUCG----CCGUCG-GCGU-CG- -5'
31115 3' -52.6 NC_006560.1 + 4153 0.66 0.957017
Target:  5'- gGCUcaugGccACGGCGGCGGCgGCgugGGCc -3'
miRNA:   3'- aUGAaa--CuuUGUCGCCGUCGgCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 99877 0.66 0.96439
Target:  5'- gGCgcgGGggUcguGGCGGCGGCgGgCGGCg -3'
miRNA:   3'- aUGaaaCUuuG---UCGCCGUCGgC-GUCG- -5'
31115 3' -52.6 NC_006560.1 + 68420 0.66 0.957017
Target:  5'- cUGCUg-GAGGCGGCGggacugcgcaccGCGGCCGCccuggggccGGCg -3'
miRNA:   3'- -AUGAaaCUUUGUCGC------------CGUCGGCG---------UCG- -5'
31115 3' -52.6 NC_006560.1 + 9541 0.66 0.96439
Target:  5'- cACggaGAGGcCGGCGGCGGCCaGCcccagGGCc -3'
miRNA:   3'- aUGaaaCUUU-GUCGCCGUCGG-CG-----UCG- -5'
31115 3' -52.6 NC_006560.1 + 83498 0.66 0.960823
Target:  5'- gAgUUUGAGGCgcgcgaGGgGGCgGGCCGCGGg -3'
miRNA:   3'- aUgAAACUUUG------UCgCCG-UCGGCGUCg -5'
31115 3' -52.6 NC_006560.1 + 95854 0.66 0.960823
Target:  5'- gUGCgagccGGACGGCGGCaucGGCCcGCGGUc -3'
miRNA:   3'- -AUGaaac-UUUGUCGCCG---UCGG-CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 102836 0.66 0.957017
Target:  5'- cGCgaggGggGCGGCGGUuggggaauggcgAGCCgggcgcGCGGCg -3'
miRNA:   3'- aUGaaa-CuuUGUCGCCG------------UCGG------CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 84407 0.66 0.96439
Target:  5'- gACggcaGggGC-GCGGCcagGGCCGCGGg -3'
miRNA:   3'- aUGaaa-CuuUGuCGCCG---UCGGCGUCg -5'
31115 3' -52.6 NC_006560.1 + 8540 0.66 0.960823
Target:  5'- cGCguggUGggGguGgGGCgacuguGGCUGCGGCg -3'
miRNA:   3'- aUGaa--ACuuUguCgCCG------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 147912 0.66 0.960823
Target:  5'- -----cGggGCGGgGGCGGgggagagggggcCCGCGGCc -3'
miRNA:   3'- augaaaCuuUGUCgCCGUC------------GGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 34395 0.66 0.96439
Target:  5'- cGCgggggggGGggUggGGCGGCGGCCGguGg -3'
miRNA:   3'- aUGaaa----CUuuG--UCGCCGUCGGCguCg -5'
31115 3' -52.6 NC_006560.1 + 55016 0.66 0.96439
Target:  5'- -----cGggGCGcGCGGaaaGGCgCGCGGCg -3'
miRNA:   3'- augaaaCuuUGU-CGCCg--UCG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 108504 0.66 0.960823
Target:  5'- cGCcg-GggGgAG-GGCGGCCgGCGGCg -3'
miRNA:   3'- aUGaaaCuuUgUCgCCGUCGG-CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 147137 0.66 0.96439
Target:  5'- -----cGAGGC-GCGcGC-GCCGCGGCg -3'
miRNA:   3'- augaaaCUUUGuCGC-CGuCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 137611 0.66 0.957017
Target:  5'- cGCggagGAGguGCGcCGGCGGCaCGCGGCc -3'
miRNA:   3'- aUGaaa-CUU--UGUcGCCGUCG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 85916 0.66 0.960823
Target:  5'- cGCgc-GGccAGC-GCGGCGGCCGCcGCc -3'
miRNA:   3'- aUGaaaCU--UUGuCGCCGUCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 133380 0.66 0.960823
Target:  5'- -cCUgccuAAgGGCGGCGGCCGCcGUc -3'
miRNA:   3'- auGAaacuUUgUCGCCGUCGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.