miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 3' -53.6 NC_006560.1 + 50359 0.66 0.960242
Target:  5'- --cUGCcaucCGAUCUGUUCGcGGCCgagcugGCg -3'
miRNA:   3'- uguACGu---GCUAGACGAGUaCCGGa-----CG- -5'
31121 3' -53.6 NC_006560.1 + 127501 0.66 0.95645
Target:  5'- cGCggGCGCGGcggaggccCUGCUCGacuGCCUGCc -3'
miRNA:   3'- -UGuaCGUGCUa-------GACGAGUac-CGGACG- -5'
31121 3' -53.6 NC_006560.1 + 113531 0.66 0.95645
Target:  5'- cGCcgGCGuc--CUGCUCAUGGCCccccaGCa -3'
miRNA:   3'- -UGuaCGUgcuaGACGAGUACCGGa----CG- -5'
31121 3' -53.6 NC_006560.1 + 22685 0.66 0.95645
Target:  5'- ---cGCGCGcgCcGC-CGUGGCCggGCg -3'
miRNA:   3'- uguaCGUGCuaGaCGaGUACCGGa-CG- -5'
31121 3' -53.6 NC_006560.1 + 137813 0.66 0.95645
Target:  5'- cCAUG-ACGAUCacgcGCUCGcagGGCCUGa -3'
miRNA:   3'- uGUACgUGCUAGa---CGAGUa--CCGGACg -5'
31121 3' -53.6 NC_006560.1 + 144464 0.66 0.952418
Target:  5'- ---cGCGCGccuuccccGUCUGCcCGUcgccGGCCUGCc -3'
miRNA:   3'- uguaCGUGC--------UAGACGaGUA----CCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 75216 0.66 0.952418
Target:  5'- cGCGcGCGCGGUCgccgagGCgcgCGcgGGCCUGg -3'
miRNA:   3'- -UGUaCGUGCUAGa-----CGa--GUa-CCGGACg -5'
31121 3' -53.6 NC_006560.1 + 109276 0.66 0.948144
Target:  5'- -gGUGCGCGGUCgagGCgua-GGCCaGCu -3'
miRNA:   3'- ugUACGUGCUAGa--CGaguaCCGGaCG- -5'
31121 3' -53.6 NC_006560.1 + 115177 0.66 0.948144
Target:  5'- gACAcGCugGggCUGCUCcUGGCgUaccGCa -3'
miRNA:   3'- -UGUaCGugCuaGACGAGuACCGgA---CG- -5'
31121 3' -53.6 NC_006560.1 + 84102 0.66 0.946813
Target:  5'- cGCcgGCgACGGggaggagCUGCUCcuguacaaggcccgGcUGGCCUGCg -3'
miRNA:   3'- -UGuaCG-UGCUa------GACGAG--------------U-ACCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 129235 0.66 0.943622
Target:  5'- ---cGCACcuGGUgCUGCUgGaGGCCUGCc -3'
miRNA:   3'- uguaCGUG--CUA-GACGAgUaCCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 77877 0.67 0.933828
Target:  5'- gGCcgGgGCGAUcCUGUUCGUGcagcGCCUGa -3'
miRNA:   3'- -UGuaCgUGCUA-GACGAGUAC----CGGACg -5'
31121 3' -53.6 NC_006560.1 + 18653 0.67 0.933828
Target:  5'- cGCGUGgGCGGagggggGCUCGUGGCCc-- -3'
miRNA:   3'- -UGUACgUGCUaga---CGAGUACCGGacg -5'
31121 3' -53.6 NC_006560.1 + 129831 0.67 0.928552
Target:  5'- gGCA-GCucuACGcgCUGCUCAUGGC--GCa -3'
miRNA:   3'- -UGUaCG---UGCuaGACGAGUACCGgaCG- -5'
31121 3' -53.6 NC_006560.1 + 107598 0.68 0.904916
Target:  5'- --uUGUACGAUUUGC-C-UGGUCUGUg -3'
miRNA:   3'- uguACGUGCUAGACGaGuACCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 4333 0.68 0.8916
Target:  5'- ---cGCGCGGguUCUGCagccagccCAUGGCCUcGCg -3'
miRNA:   3'- uguaCGUGCU--AGACGa-------GUACCGGA-CG- -5'
31121 3' -53.6 NC_006560.1 + 18334 0.68 0.8916
Target:  5'- uCGUGCGCGcggccgacCUGCggcgCGUGGCC-GCg -3'
miRNA:   3'- uGUACGUGCua------GACGa---GUACCGGaCG- -5'
31121 3' -53.6 NC_006560.1 + 115810 0.68 0.8916
Target:  5'- cCGUGUACGAggcGCUCGUcGCCUGg -3'
miRNA:   3'- uGUACGUGCUagaCGAGUAcCGGACg -5'
31121 3' -53.6 NC_006560.1 + 102523 0.68 0.884578
Target:  5'- ---cGCuCGAUCUccaccggcaGCUCGgcGGCCUGCg -3'
miRNA:   3'- uguaCGuGCUAGA---------CGAGUa-CCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 24639 0.68 0.877318
Target:  5'- cGCcgGCGCcGUCgaGUUCcugGGCCUGCu -3'
miRNA:   3'- -UGuaCGUGcUAGa-CGAGua-CCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.