miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 22214 0.66 0.986708
Target:  5'- gCCCGCCCCCGcggccc---CGGCcCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 22272 0.71 0.873833
Target:  5'- gCCgCGCCCCCGccgaccccgggCGGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaa--GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 22385 0.69 0.938067
Target:  5'- cCCCGCCCCCGgcucggacccCGGCuCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 22840 0.72 0.829786
Target:  5'- cCCCGCCCCCGg---------GGCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 23366 0.7 0.914125
Target:  5'- gCCGCCCCCGgccucgccggcuaCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 23429 0.66 0.985873
Target:  5'- gCCGCCCUCGccgccgaccgCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa-GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 23940 0.66 0.990455
Target:  5'- cCUCGCCCCCG---------CGGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 23961 0.69 0.950385
Target:  5'- gCCCGCCgCCCGcccgc----CGGCGCGc -3'
miRNA:   3'- -GGGCGG-GGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 24057 0.71 0.895725
Target:  5'- cCCgCGCCCCCGgcccg----CGGCGCu -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 25412 0.74 0.739258
Target:  5'- cCCCGCCCCCGcccugggg--GGCGCGa -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 25738 0.67 0.977676
Target:  5'- cCCCGgCCCCGccacagaca-GGCGCGa -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 26167 0.68 0.969846
Target:  5'- cCCCGCCCCCGggGAgccugggGUccggaaUCugcccGUGCGa -3'
miRNA:   3'- -GGGCGGGGGCaaUUaa-----UA------AGu----CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 27367 0.7 0.92832
Target:  5'- aCCGCCCcgCCGggAAacg--CGGCGCGg -3'
miRNA:   3'- gGGCGGG--GGCaaUUaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 27796 0.71 0.898385
Target:  5'- gCCCGgCCgCCGUUcc---UUCGGCGCGc -3'
miRNA:   3'- -GGGCgGG-GGCAAuuaauAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 28621 1.12 0.005076
Target:  5'- gCCCGCCCCCGUUAAUUAUUCAGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCAAUUAAUAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 29126 0.66 0.989127
Target:  5'- aCCGCCCCUuggGggAGUgggcuccCGGCGCa -3'
miRNA:   3'- gGGCGGGGG---CaaUUAauaa---GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 29318 0.66 0.990455
Target:  5'- cCCCGCuCCCCGgacccaugGAgcccUC-GCGCGg -3'
miRNA:   3'- -GGGCG-GGGGCaa------UUaauaAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 29798 0.73 0.806013
Target:  5'- cCCCGCCCCCGccccgcgaggUCuGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaaua--AGuCGCGc -5'
31128 5' -51.7 NC_006560.1 + 30897 0.67 0.984998
Target:  5'- cCCCGCCCCgGgccca-----GGCGCa -3'
miRNA:   3'- -GGGCGGGGgCaauuaauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 35345 0.73 0.796894
Target:  5'- gCCGCCCCCGgcccccga--GGCGCGc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaagUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.