miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 1 0.66 0.987659
Target:  5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3'
miRNA:   3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 103 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 180 0.66 0.990455
Target:  5'- uCCCGgCCCCGccggcGUUuuuUUCcGCGCGc -3'
miRNA:   3'- -GGGCgGGGGCaau--UAAu--AAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 662 0.68 0.96095
Target:  5'- uUCGCaCCCCGgcgcgcccgCGGCGCGg -3'
miRNA:   3'- gGGCG-GGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 755 0.71 0.886818
Target:  5'- cCCCGUCCCCcccccccg--CGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 951 0.66 0.990071
Target:  5'- cCCCGCCCCCGaucuucacUAggCcugcacgcccgggGGCGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauua---AUaaG-------------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 6347 0.7 0.902301
Target:  5'- cCCCGCCCCgGcccgcccUUCGGgGCGg -3'
miRNA:   3'- -GGGCGGGGgCaauuaauAAGUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 7178 0.65 0.992418
Target:  5'- cCCCGCCCCCGcgggcccg-CGGCccCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGc-GC- -5'
31128 5' -51.7 NC_006560.1 + 13417 0.67 0.977916
Target:  5'- aCCGCCUCCG--------UCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 13652 0.68 0.96095
Target:  5'- cCCCGCCCgCCGagacgcacgCgAGCGCGa -3'
miRNA:   3'- -GGGCGGG-GGCaauuaauaaG-UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 13793 0.67 0.975427
Target:  5'- aUCGCCCUCGg----UGUUCGGgGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaAUAAGUCgCGc -5'
31128 5' -51.7 NC_006560.1 + 14119 0.67 0.974109
Target:  5'- cCCCGCgCCCauggcggccagggUCAGCGCGc -3'
miRNA:   3'- -GGGCGgGGGcaauuaaua----AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15155 0.71 0.877514
Target:  5'- cCCCGCCCCCGgcg-----UCuuCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGucGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15329 0.66 0.988845
Target:  5'- gCCGgUCCCGUUcgcggc-CGGCGCGg -3'
miRNA:   3'- gGGCgGGGGCAAuuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15508 0.68 0.971319
Target:  5'- cCCCGCCCCCGagucccggggcCAGC-CGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa--GUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 16001 0.66 0.98719
Target:  5'- cCCCgacaGCCCCCGUaccaccgg-AGCGCGa -3'
miRNA:   3'- -GGG----CGGGGGCAauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 18084 0.67 0.984083
Target:  5'- cCCCGCCCCuCGagagagcgggCGGuCGCGg -3'
miRNA:   3'- -GGGCGGGG-GCaauuaauaa-GUC-GCGC- -5'
31128 5' -51.7 NC_006560.1 + 18882 0.67 0.980214
Target:  5'- cCCCGCCCgCCGUggg-----CGGCGg- -3'
miRNA:   3'- -GGGCGGG-GGCAauuaauaaGUCGCgc -5'
31128 5' -51.7 NC_006560.1 + 19091 0.67 0.979769
Target:  5'- cCCCGCCCCCucccccuuGUcuucugcgGUUCGGCGg- -3'
miRNA:   3'- -GGGCGGGGG--------CAauuaa---UAAGUCGCgc -5'
31128 5' -51.7 NC_006560.1 + 21709 0.67 0.981504
Target:  5'- gCCGCCCCCGcgccc----CGGgGCGg -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.