miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 7178 0.65 0.992418
Target:  5'- cCCCGCCCCCGcgggcccg-CGGCccCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGc-GC- -5'
31128 5' -51.7 NC_006560.1 + 92651 0.72 0.838253
Target:  5'- gCCUGCCCgCGggccgGGUUcgUguGCGCGg -3'
miRNA:   3'- -GGGCGGGgGCaa---UUAAuaAguCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 50207 0.72 0.844064
Target:  5'- -aCGCCCCCGggcggcgg-CGGCGCGc -3'
miRNA:   3'- ggGCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 72337 0.72 0.854594
Target:  5'- gCCgCGCCUCCGUcGGgggUGUggGGCGCGg -3'
miRNA:   3'- -GG-GCGGGGGCAaUUa--AUAagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 78104 0.71 0.870095
Target:  5'- aCgGCCCCCGggcgcUGGUggcggUCAGCGUGc -3'
miRNA:   3'- gGgCGGGGGCa----AUUAaua--AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 22272 0.71 0.873833
Target:  5'- gCCgCGCCCCCGccgaccccgggCGGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaa--GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 122085 0.71 0.877514
Target:  5'- gCgGCCCaCCGggAGUUGga-GGCGCGg -3'
miRNA:   3'- gGgCGGG-GGCaaUUAAUaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15155 0.71 0.877514
Target:  5'- cCCCGCCCCCGgcg-----UCuuCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGucGCGC- -5'
31128 5' -51.7 NC_006560.1 + 77958 0.71 0.879696
Target:  5'- gCCGCCCCCGgccaccggccuccUGUUCGGCacGCGc -3'
miRNA:   3'- gGGCGGGGGCaauua--------AUAAGUCG--CGC- -5'
31128 5' -51.7 NC_006560.1 + 22840 0.72 0.829786
Target:  5'- cCCCGCCCCCGg---------GGCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 29798 0.73 0.806013
Target:  5'- cCCCGCCCCCGccccgcgaggUCuGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaaua--AGuCGCGc -5'
31128 5' -51.7 NC_006560.1 + 35345 0.73 0.796894
Target:  5'- gCCGCCCCCGgcccccga--GGCGCGc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 140391 0.8 0.433563
Target:  5'- gUCGUCCCCGggGGggGUUCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaaUUaaUAAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 103 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150432 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 141750 0.78 0.521006
Target:  5'- cCCCGCCCCCGcgcccgcgUUGGCGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 25412 0.74 0.739258
Target:  5'- cCCCGCCCCCGcccugggg--GGCGCGa -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 139257 0.74 0.756036
Target:  5'- gCCCGgaCCCCCGggGGcgcgcggUcgUCGGCGCGg -3'
miRNA:   3'- -GGGC--GGGGGCaaUUa------AuaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 85229 0.74 0.770568
Target:  5'- uUCCGCCUCCGUgacgccggcgcccgCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCAauuaauaa------GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 103097 0.73 0.792277
Target:  5'- uCCCGCCCCCGcgGAcccggcggCGGaCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaaUUaauaa---GUC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.