miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 7178 0.65 0.992418
Target:  5'- cCCCGCCCCCGcgggcccg-CGGCccCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGc-GC- -5'
31128 5' -51.7 NC_006560.1 + 41663 0.65 0.992205
Target:  5'- gCCCGCgUCCGgugccgucgcgggCGGCGCGu -3'
miRNA:   3'- -GGGCGgGGGCaauuaauaa----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15329 0.66 0.988845
Target:  5'- gCCGgUCCCGUUcgcggc-CGGCGCGg -3'
miRNA:   3'- gGGCgGGGGCAAuuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 41478 0.66 0.987813
Target:  5'- aCCCGCCCCagcagc----UCgAGCGCGa -3'
miRNA:   3'- -GGGCGGGGgcaauuaauaAG-UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 78317 0.66 0.987659
Target:  5'- aCCgGCCCUCGggc------CAGCGCGu -3'
miRNA:   3'- -GGgCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 106184 0.66 0.986043
Target:  5'- cCCCGCCCCCcgcucuucuggCGGCugGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaa-GUCG--CGC- -5'
31128 5' -51.7 NC_006560.1 + 39361 0.66 0.986211
Target:  5'- cCCCGgCCCCGgcggccc--CGGCGCc -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 57969 0.66 0.986043
Target:  5'- gCCUuauaGCCCCCGc-------UCGGCGCGg -3'
miRNA:   3'- -GGG----CGGGGGCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 112225 0.66 0.987505
Target:  5'- gCCCGCCUUCGggAGgaGUUCcuggagacguggcAGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaaUUaaUAAG-------------UCGCGc -5'
31128 5' -51.7 NC_006560.1 + 39191 0.66 0.986708
Target:  5'- cCCCGCgCCCCGgucccucucGUUCcgcgGGCGUGu -3'
miRNA:   3'- -GGGCG-GGGGCaauuaa---UAAG----UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 22214 0.66 0.986708
Target:  5'- gCCCGCCCCCGcggccc---CGGCcCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 147676 0.66 0.988264
Target:  5'- aCCGCCUCCucggcc---UCGGCGCGc -3'
miRNA:   3'- gGGCGGGGGcaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 52678 0.66 0.986708
Target:  5'- cCCCGCCCUgGUccccaagcUCcuGGCGCGg -3'
miRNA:   3'- -GGGCGGGGgCAauuaaua-AG--UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 147460 0.66 0.986043
Target:  5'- uCCCGCCacccaCCGgcgUGGUUGUcgucgUCGGUGUc -3'
miRNA:   3'- -GGGCGGg----GGCa--AUUAAUA-----AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 16001 0.66 0.98719
Target:  5'- cCCCgacaGCCCCCGUaccaccgg-AGCGCGa -3'
miRNA:   3'- -GGG----CGGGGGCAauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 101220 0.66 0.987659
Target:  5'- cCUCGCCgaCCGggGucgUGUUC-GCGCGg -3'
miRNA:   3'- -GGGCGGg-GGCaaUua-AUAAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150330 0.66 0.987659
Target:  5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3'
miRNA:   3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 92360 0.66 0.986043
Target:  5'- gCCGCCgCCUGgucucugcgcggCGGCGCGg -3'
miRNA:   3'- gGGCGG-GGGCaauuaauaa---GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 81933 0.66 0.986211
Target:  5'- aCCCGUUcugCCCGUUAAacuggaaggcgCAGCGCa -3'
miRNA:   3'- -GGGCGG---GGGCAAUUaauaa------GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 1 0.66 0.987659
Target:  5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3'
miRNA:   3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.