miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 22270 0.77 0.134093
Target:  5'- aCGCCgCGCCCCCgCCGACcccgggcGGCGCgCCg -3'
miRNA:   3'- -GCGG-GCGGGGGaGGUUGua-----CCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 24054 0.77 0.137424
Target:  5'- cCGCCCGCgCCC-CCGGCccgcGGCGCUCa -3'
miRNA:   3'- -GCGGGCGgGGGaGGUUGua--CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 55709 0.76 0.140831
Target:  5'- gGCCCGCCCgcgCCUCCGACGUcagggucgaGGUGgCCg -3'
miRNA:   3'- gCGGGCGGG---GGAGGUUGUA---------CCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 100403 0.76 0.140831
Target:  5'- gCGCCuCGCCCuCCUCCAggcGCcgGGuCGCCa -3'
miRNA:   3'- -GCGG-GCGGG-GGAGGU---UGuaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 5617 0.76 0.140831
Target:  5'- cCGCCCGCCucauauacCCCggCCGGCGacgggcGGCGCCCg -3'
miRNA:   3'- -GCGGGCGG--------GGGa-GGUUGUa-----CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 11004 0.76 0.144315
Target:  5'- gGCCaccaCGCCCCCUCC--CccGGCGCCCc -3'
miRNA:   3'- gCGG----GCGGGGGAGGuuGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 27442 0.76 0.144315
Target:  5'- gCGUCCGCgUCCUCCcGC--GGCGCCCg -3'
miRNA:   3'- -GCGGGCGgGGGAGGuUGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 24101 0.76 0.144315
Target:  5'- gGCCCGaCCCCCg-CGGCGgcUGGCGCCg -3'
miRNA:   3'- gCGGGC-GGGGGagGUUGU--ACCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 15401 0.76 0.144315
Target:  5'- -cUCCGCCCCCUCCGGCAcGGacagcagGCCCc -3'
miRNA:   3'- gcGGGCGGGGGAGGUUGUaCCg------CGGG- -5'
31129 5' -63.4 NC_006560.1 + 19593 0.76 0.144668
Target:  5'- gGCCCGCUCgucgucggaggcagaCUCCAGgGUGGCGUCCg -3'
miRNA:   3'- gCGGGCGGGg--------------GAGGUUgUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 148196 0.76 0.147878
Target:  5'- cCGuCCCGCCuCUCUCCGGCGgggacGCGCCCc -3'
miRNA:   3'- -GC-GGGCGG-GGGAGGUUGUac---CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 84454 0.76 0.147878
Target:  5'- cCGCCCGUCCCUccgCCGGC-UGGaGCCCa -3'
miRNA:   3'- -GCGGGCGGGGGa--GGUUGuACCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 79637 0.76 0.151521
Target:  5'- -cCCCGUCCCCUCgccacccgCAACGUccGGCGCCCc -3'
miRNA:   3'- gcGGGCGGGGGAG--------GUUGUA--CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 141748 0.76 0.155245
Target:  5'- aGcCCCGCCCCCgcgCCcGCGUuGGCGCgCg -3'
miRNA:   3'- gC-GGGCGGGGGa--GGuUGUA-CCGCGgG- -5'
31129 5' -63.4 NC_006560.1 + 51776 0.76 0.155245
Target:  5'- gGCCuCGCgCCCC-CCGGCGgcgGGCGCCg -3'
miRNA:   3'- gCGG-GCG-GGGGaGGUUGUa--CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 67863 0.76 0.155245
Target:  5'- gCGCgCCGCCCCCagaggacgUCCGG-GUGGCGCCg -3'
miRNA:   3'- -GCG-GGCGGGGG--------AGGUUgUACCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 144841 0.76 0.159052
Target:  5'- gGCCCuGCCCCCUCUgccCGgggGGCuGCCCg -3'
miRNA:   3'- gCGGG-CGGGGGAGGuu-GUa--CCG-CGGG- -5'
31129 5' -63.4 NC_006560.1 + 31172 0.76 0.162943
Target:  5'- uGCCCGCgCCCC-CCGACGcgccGGCccGCCCg -3'
miRNA:   3'- gCGGGCG-GGGGaGGUUGUa---CCG--CGGG- -5'
31129 5' -63.4 NC_006560.1 + 42654 0.75 0.166919
Target:  5'- aCGCCUGCCCCCggggCGcCAUGGCGaUCCg -3'
miRNA:   3'- -GCGGGCGGGGGag--GUuGUACCGC-GGG- -5'
31129 5' -63.4 NC_006560.1 + 52238 0.75 0.166919
Target:  5'- uGCCUGgCCCCggCCGGCGcGGCGCaCCg -3'
miRNA:   3'- gCGGGCgGGGGa-GGUUGUaCCGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.