miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 5617 0.76 0.140831
Target:  5'- cCGCCCGCCucauauacCCCggCCGGCGacgggcGGCGCCCg -3'
miRNA:   3'- -GCGGGCGG--------GGGa-GGUUGUa-----CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 6078 0.7 0.346447
Target:  5'- gCGCCCGCUcgcgCCCUCgCGuCGagGGCGCCg -3'
miRNA:   3'- -GCGGGCGG----GGGAG-GUuGUa-CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 6110 0.67 0.542034
Target:  5'- gCGCcgCCGCCgCCCUCaccgcgccuGCGcGGCGUCCc -3'
miRNA:   3'- -GCG--GGCGG-GGGAGgu-------UGUaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 6344 0.66 0.599527
Target:  5'- gCGcCCCGCCCCggCCcGCccuucggGGCggGCCCg -3'
miRNA:   3'- -GC-GGGCGGGGgaGGuUGua-----CCG--CGGG- -5'
31129 5' -63.4 NC_006560.1 + 6385 0.74 0.19726
Target:  5'- cCGCCCuuCCCCCgCCGACAUaaagccggcGGCGCCg -3'
miRNA:   3'- -GCGGGc-GGGGGaGGUUGUA---------CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 6455 0.69 0.392493
Target:  5'- cCGCCgGCCCuCCUC--GCuccGCGCCCa -3'
miRNA:   3'- -GCGGgCGGG-GGAGguUGuacCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 6862 0.7 0.387713
Target:  5'- cCGCCCGCgCCCCUCCGcgcaggacACAugucaucguuauauuUGGCGaCg -3'
miRNA:   3'- -GCGGGCG-GGGGAGGU--------UGU---------------ACCGCgGg -5'
31129 5' -63.4 NC_006560.1 + 7042 0.66 0.570605
Target:  5'- uGCUCGCCCCUccuUCCG-CAc--CGCCCa -3'
miRNA:   3'- gCGGGCGGGGG---AGGUuGUaccGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 7137 0.69 0.416961
Target:  5'- aGCgCCGCa-CgUCCGggcACAUGGCGUCCg -3'
miRNA:   3'- gCG-GGCGggGgAGGU---UGUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 7588 0.68 0.477484
Target:  5'- gCGCUCGagCCgCUCCGuacgcgGCAgaaccGGCGCCCg -3'
miRNA:   3'- -GCGGGCg-GGgGAGGU------UGUa----CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 8665 0.71 0.311127
Target:  5'- gGCCCGCgUUCgCCGGCGgcGGCGCCUg -3'
miRNA:   3'- gCGGGCGgGGGaGGUUGUa-CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 8961 0.71 0.322821
Target:  5'- gCGCCgacgucauguaauaCGCaCCCCacaCAGCAcGGCGCCCa -3'
miRNA:   3'- -GCGG--------------GCG-GGGGag-GUUGUaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 9502 0.67 0.55056
Target:  5'- uCGCCaCGCCCgCgcgcgCCGGCA-GGUgacgcagGCCCa -3'
miRNA:   3'- -GCGG-GCGGGgGa----GGUUGUaCCG-------CGGG- -5'
31129 5' -63.4 NC_006560.1 + 9843 0.7 0.368978
Target:  5'- gGCCgGgCCUggCCUCCAugGcGGCGUCCg -3'
miRNA:   3'- gCGGgC-GGG--GGAGGUugUaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 10278 0.73 0.248862
Target:  5'- -uCCCGCCCCCUCCGcgagaggggGCG-GGcCGCCg -3'
miRNA:   3'- gcGGGCGGGGGAGGU---------UGUaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 10914 0.71 0.324918
Target:  5'- aCGCCgGCCgCCgCCGGC--GGCGCCUu -3'
miRNA:   3'- -GCGGgCGGgGGaGGUUGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 11004 0.76 0.144315
Target:  5'- gGCCaccaCGCCCCCUCC--CccGGCGCCCc -3'
miRNA:   3'- gCGG----GCGGGGGAGGuuGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 11728 0.67 0.542034
Target:  5'- gGCCgGCCCCa---GGCGcGGgGCCCg -3'
miRNA:   3'- gCGGgCGGGGgaggUUGUaCCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 11864 0.66 0.576366
Target:  5'- gCGUucgUCGCCCCCUCgacccacacccgggCGACGUacaggccgacgacGGCGUCCg -3'
miRNA:   3'- -GCG---GGCGGGGGAG--------------GUUGUA-------------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 12195 0.66 0.570605
Target:  5'- gGCgCCGUCCgCC-CCGACG-GGC-CCCg -3'
miRNA:   3'- gCG-GGCGGG-GGaGGUUGUaCCGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.