miRNA display CGI


Results 1 - 20 of 444 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 100 0.7 0.384547
Target:  5'- gCGcCCCGCCCCCgcggCCG-CGgccGGCGCg- -3'
miRNA:   3'- -GC-GGGCGGGGGa---GGUuGUa--CCGCGgg -5'
31129 5' -63.4 NC_006560.1 + 328 0.67 0.504724
Target:  5'- gGCCCcgGCCCCCUCUcGCcccucuCGCCCc -3'
miRNA:   3'- gCGGG--CGGGGGAGGuUGuacc--GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 400 0.71 0.303733
Target:  5'- gCGCCCGCCCCCcCCcGCcccgccuGUGGgGUUCc -3'
miRNA:   3'- -GCGGGCGGGGGaGGuUG-------UACCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 446 0.67 0.523251
Target:  5'- gGCCUccgcgGCCUCC-CCGGCG-GGCGgCCa -3'
miRNA:   3'- gCGGG-----CGGGGGaGGUUGUaCCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 483 0.66 0.598559
Target:  5'- cCGuCCCgGCCCCCgucggucucgcucUCCcGCcacgGGCGCCg -3'
miRNA:   3'- -GC-GGG-CGGGGG-------------AGGuUGua--CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 538 0.67 0.513954
Target:  5'- cCGgCCGCgCCCCggguccCCGGCGUcccccGcGCGCCCc -3'
miRNA:   3'- -GCgGGCG-GGGGa-----GGUUGUA-----C-CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 887 0.74 0.211677
Target:  5'- gCGCCCGCCCCCcgCCGg---GGcCGCCg -3'
miRNA:   3'- -GCGGGCGGGGGa-GGUuguaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 988 0.71 0.331982
Target:  5'- gGCgCGCCCCUcgccCCGGCcggGGCGCCg -3'
miRNA:   3'- gCGgGCGGGGGa---GGUUGua-CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 1021 0.72 0.291283
Target:  5'- cCGcCCCGCCgUCUCCGcccucccggguACcUGGCGCUCg -3'
miRNA:   3'- -GC-GGGCGGgGGAGGU-----------UGuACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 1127 0.7 0.361357
Target:  5'- aCGCgC-CCCCCUCCGGCccGGCcUCCg -3'
miRNA:   3'- -GCGgGcGGGGGAGGUUGuaCCGcGGG- -5'
31129 5' -63.4 NC_006560.1 + 1234 0.71 0.297785
Target:  5'- uGCCgCGCCCCCacgcagccCCGGCggGGCcCCCg -3'
miRNA:   3'- gCGG-GCGGGGGa-------GGUUGuaCCGcGGG- -5'
31129 5' -63.4 NC_006560.1 + 1272 0.73 0.254016
Target:  5'- aGCCCccgcgaaGCCCCCgCCGcGCcgGGCcGCCCg -3'
miRNA:   3'- gCGGG-------CGGGGGaGGU-UGuaCCG-CGGG- -5'
31129 5' -63.4 NC_006560.1 + 1312 0.73 0.254594
Target:  5'- cCGCCCGCacggcUCCCgagCCc-CcgGGCGCCCg -3'
miRNA:   3'- -GCGGGCG-----GGGGa--GGuuGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 1356 0.7 0.346447
Target:  5'- gCGCgCGgguCCCCCgcggCCcGCAcGGCGCCCc -3'
miRNA:   3'- -GCGgGC---GGGGGa---GGuUGUaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 1583 0.73 0.248862
Target:  5'- uCGCgCGCCCCCUCCuccgaucgacGCGgccGGCGCgCg -3'
miRNA:   3'- -GCGgGCGGGGGAGGu---------UGUa--CCGCGgG- -5'
31129 5' -63.4 NC_006560.1 + 2657 0.69 0.392493
Target:  5'- gGCCCGUcggcgggccaCUCCUCgGGCGgcacGGCGUCCa -3'
miRNA:   3'- gCGGGCG----------GGGGAGgUUGUa---CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 3916 0.7 0.361357
Target:  5'- gCGUCCcCCUCCUCCGccGCGggggcGGCGCCg -3'
miRNA:   3'- -GCGGGcGGGGGAGGU--UGUa----CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 4471 0.66 0.580214
Target:  5'- gGCgCGCCUCCgCCAcCucgGGCGCgCCc -3'
miRNA:   3'- gCGgGCGGGGGaGGUuGua-CCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 5220 0.78 0.107303
Target:  5'- gGgCCGUCUCCUCCAcCAUGGCGgCCa -3'
miRNA:   3'- gCgGGCGGGGGAGGUuGUACCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 5310 0.67 0.541089
Target:  5'- cCGCCgCGUgcgacggcggcggCCCCUCCGGguccGGCGUCCu -3'
miRNA:   3'- -GCGG-GCG-------------GGGGAGGUUgua-CCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.