miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 91783 0.66 0.609219
Target:  5'- cCGCCaucucgGCCCCCagccUCaCGGCcgGGCagcgGCCCc -3'
miRNA:   3'- -GCGGg-----CGGGGG----AG-GUUGuaCCG----CGGG- -5'
31129 5' -63.4 NC_006560.1 + 5220 0.78 0.107303
Target:  5'- gGgCCGUCUCCUCCAcCAUGGCGgCCa -3'
miRNA:   3'- gCgGGCGGGGGAGGUuGUACCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 21019 0.78 0.118527
Target:  5'- gGCCCGCCCCgaagggcgggCCGggGCggGGCGCCCg -3'
miRNA:   3'- gCGGGCGGGGga--------GGU--UGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 22213 0.77 0.121499
Target:  5'- gGCCCGCCCCCgcggccCCGGCccGG-GCCCc -3'
miRNA:   3'- gCGGGCGGGGGa-----GGUUGuaCCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 128716 0.77 0.121499
Target:  5'- aCGCCCauGCUCCUgaaCCAcguCGUGGCGCCCg -3'
miRNA:   3'- -GCGGG--CGGGGGa--GGUu--GUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 144110 0.77 0.127338
Target:  5'- cCGCCgGCCCCugccuggCUCCGGCGgccgcggcGGCGCCCc -3'
miRNA:   3'- -GCGGgCGGGG-------GAGGUUGUa-------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 118263 0.77 0.130836
Target:  5'- cCGCCgCGCCgCC-CCGGcCGUGGCGUCCg -3'
miRNA:   3'- -GCGG-GCGGgGGaGGUU-GUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 22270 0.77 0.134093
Target:  5'- aCGCCgCGCCCCCgCCGACcccgggcGGCGCgCCg -3'
miRNA:   3'- -GCGG-GCGGGGGaGGUUGua-----CCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 35997 0.77 0.134093
Target:  5'- uCGCCC-CCCCCUCCGGaggggguggGGgGCCCg -3'
miRNA:   3'- -GCGGGcGGGGGAGGUUgua------CCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 60199 0.78 0.104657
Target:  5'- aGCaCCGCCUUCUCCAACAUG-CGCCg -3'
miRNA:   3'- gCG-GGCGGGGGAGGUUGUACcGCGGg -5'
31129 5' -63.4 NC_006560.1 + 56092 0.79 0.099549
Target:  5'- gGCCCGCCCCCUCCGcccagcGCAcccgcuCGCCCg -3'
miRNA:   3'- gCGGGCGGGGGAGGU------UGUacc---GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 114975 0.79 0.097083
Target:  5'- cCGCCCGCUCCCUCCc-----GCGCCCg -3'
miRNA:   3'- -GCGGGCGGGGGAGGuuguacCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 90279 0.81 0.064729
Target:  5'- gGCCCGCCUCCUCUucgaggccguCGUGGgGCCCg -3'
miRNA:   3'- gCGGGCGGGGGAGGuu--------GUACCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 12671 0.81 0.071679
Target:  5'- gCGCCgGCcagCCCCgcgCCGACgAUGGCGCCCg -3'
miRNA:   3'- -GCGGgCG---GGGGa--GGUUG-UACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 30607 0.8 0.075418
Target:  5'- gCGCCCGCCCCCcgCCGACu---CGCCCa -3'
miRNA:   3'- -GCGGGCGGGGGa-GGUUGuaccGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 145215 0.8 0.077357
Target:  5'- gGCCC-CCCCUUCCuGC-UGGCGCCCc -3'
miRNA:   3'- gCGGGcGGGGGAGGuUGuACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 77135 0.8 0.079344
Target:  5'- cCGCCCGCgCCCCUgcucgCCGACAUccGCGCCCu -3'
miRNA:   3'- -GCGGGCG-GGGGA-----GGUUGUAc-CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 53544 0.8 0.081173
Target:  5'- gGCCCGCCCCggCUCCAcgcccgcgugcgcGCGUcGCGCCCg -3'
miRNA:   3'- gCGGGCGGGG--GAGGU-------------UGUAcCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 80027 0.8 0.081379
Target:  5'- gCGCCCGCCUCCga-GACAccGGCGCCCc -3'
miRNA:   3'- -GCGGGCGGGGGaggUUGUa-CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 77696 0.79 0.092093
Target:  5'- gCGCUCGCCCCgCUcgcggagCCGGCG-GGCGCCCg -3'
miRNA:   3'- -GCGGGCGGGG-GA-------GGUUGUaCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.