miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 111504 0.66 0.568687
Target:  5'- uGgCCGuCCCCCggcucacgcacgCCGACAcccgcgGGCgGCCCg -3'
miRNA:   3'- gCgGGC-GGGGGa-----------GGUUGUa-----CCG-CGGG- -5'
31129 5' -63.4 NC_006560.1 + 95486 0.66 0.570605
Target:  5'- gGCCCaGCCCC--CCAACAccGCGCUg -3'
miRNA:   3'- gCGGG-CGGGGgaGGUUGUacCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 115517 0.66 0.567729
Target:  5'- aGCUCGCCgaCCUCaacgcggucuucuaCAACggGGCGCgCCu -3'
miRNA:   3'- gCGGGCGGg-GGAG--------------GUUGuaCCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 79195 0.66 0.570605
Target:  5'- gGCCCGCaCCUCggccauccgagCCGGCGgugagaucucGCGCCCg -3'
miRNA:   3'- gCGGGCG-GGGGa----------GGUUGUac--------CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 79505 0.66 0.561035
Target:  5'- cCGCCgCGCCgCCCggcCCAcCGUcGGCuCCCu -3'
miRNA:   3'- -GCGG-GCGG-GGGa--GGUuGUA-CCGcGGG- -5'
31129 5' -63.4 NC_006560.1 + 114072 0.66 0.561035
Target:  5'- uGCgCGCCCCCgugaCgGACAUGGgGaaCCUg -3'
miRNA:   3'- gCGgGCGGGGGa---GgUUGUACCgC--GGG- -5'
31129 5' -63.4 NC_006560.1 + 7042 0.66 0.570605
Target:  5'- uGCUCGCCCCUccuUCCG-CAc--CGCCCa -3'
miRNA:   3'- gCGGGCGGGGG---AGGUuGUaccGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 124990 0.66 0.570605
Target:  5'- gCGUUCGaCCCCgCCGACGccGGCGaCCCc -3'
miRNA:   3'- -GCGGGCgGGGGaGGUUGUa-CCGC-GGG- -5'
31129 5' -63.4 NC_006560.1 + 24680 0.66 0.561035
Target:  5'- cCGgCCGCCgCCUCgucguCGUGGaCGCCg -3'
miRNA:   3'- -GCgGGCGGgGGAGguu--GUACC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 91783 0.66 0.609219
Target:  5'- cCGCCaucucgGCCCCCagccUCaCGGCcgGGCagcgGCCCc -3'
miRNA:   3'- -GCGGg-----CGGGGG----AG-GUUGuaCCG----CGGG- -5'
31129 5' -63.4 NC_006560.1 + 97423 0.66 0.570605
Target:  5'- gGCCCcuccguggaCCCCC-CCAGCGUGGaGCgCa -3'
miRNA:   3'- gCGGGc--------GGGGGaGGUUGUACCgCGgG- -5'
31129 5' -63.4 NC_006560.1 + 144920 0.66 0.561035
Target:  5'- gGCCC-CCCCCUCCccCu---CGCCCu -3'
miRNA:   3'- gCGGGcGGGGGAGGuuGuaccGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 12195 0.66 0.570605
Target:  5'- gGCgCCGUCCgCC-CCGACG-GGC-CCCg -3'
miRNA:   3'- gCG-GGCGGG-GGaGGUUGUaCCGcGGG- -5'
31129 5' -63.4 NC_006560.1 + 37018 0.66 0.56008
Target:  5'- uCGCCgGgCCUC-CCGACGUaccgcgaGGCGCuCCg -3'
miRNA:   3'- -GCGGgCgGGGGaGGUUGUA-------CCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 16422 0.66 0.557219
Target:  5'- cCGCCCGCCCgCgCCGGCucccuuuuguacGGgGCCg -3'
miRNA:   3'- -GCGGGCGGGgGaGGUUGua----------CCgCGGg -5'
31129 5' -63.4 NC_006560.1 + 58077 0.66 0.570605
Target:  5'- aGCCCGaaCCCCaggUCCGcguacGCGgccGCGCCCg -3'
miRNA:   3'- gCGGGC--GGGGg--AGGU-----UGUac-CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 104885 0.66 0.570605
Target:  5'- gCGCCgGCCCCCUCguCGGCAUuuuuccgaGGagauCCCg -3'
miRNA:   3'- -GCGGgCGGGGGAG--GUUGUA--------CCgc--GGG- -5'
31129 5' -63.4 NC_006560.1 + 31522 0.66 0.569646
Target:  5'- uGCCUGCCggUCCU-CGACAUggagacgGGCGCCa -3'
miRNA:   3'- gCGGGCGG--GGGAgGUUGUA-------CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 106831 0.66 0.561035
Target:  5'- uGCgCCGCCuCCCUCCGcuucgaucugGCcgaGCGCUCg -3'
miRNA:   3'- gCG-GGCGG-GGGAGGU----------UGuacCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 25410 0.66 0.561035
Target:  5'- aGcCCCGCCCCCgCCcuggggGGCGCg- -3'
miRNA:   3'- gC-GGGCGGGGGaGGuugua-CCGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.