miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 3' -59.3 NC_006560.1 + 30447 1.09 0.001382
Target:  5'- cCAGAGGAGGAGCAGGAGGAGGAGGAGg -3'
miRNA:   3'- -GUCUCCUCCUCGUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36351 0.93 0.017997
Target:  5'- gAGGGGGGGAGgGGGAGGGGGAGGGGg -3'
miRNA:   3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36266 0.91 0.022972
Target:  5'- aGGAGGGGGAGgaGGGAGGAGGGGGAGg -3'
miRNA:   3'- gUCUCCUCCUCg-UCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 25614 0.88 0.036349
Target:  5'- gAGAGGGGGAG-AGGGGGAGGGGGGGa -3'
miRNA:   3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 25638 0.87 0.046275
Target:  5'- gAGGGGGGGAG-GGGGGGAGGGGGAGa -3'
miRNA:   3'- gUCUCCUCCUCgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36314 0.87 0.046275
Target:  5'- gGGAGGGGGAuggGgGGGAGGAGGGGGAGg -3'
miRNA:   3'- gUCUCCUCCU---CgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36376 0.86 0.057284
Target:  5'- gGGAGGGGGgaGGgGGGAGGGGGAGGGGg -3'
miRNA:   3'- gUCUCCUCC--UCgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 30516 0.85 0.058827
Target:  5'- gCGGGGGAGGGGgAGGGGGcGGGGGGAGa -3'
miRNA:   3'- -GUCUCCUCCUCgUCCUCC-UCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 11106 0.84 0.070813
Target:  5'- gCGGAGGAGG-GCGGGGGGGGGGGGc- -3'
miRNA:   3'- -GUCUCCUCCuCGUCCUCCUCCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 25700 0.84 0.072707
Target:  5'- gAGAGGGGGAGaGGGGGaGAGGGGGAGa -3'
miRNA:   3'- gUCUCCUCCUCgUCCUC-CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 25668 0.84 0.072707
Target:  5'- gAGAGGGGGAGaGGGGGaGAGGGGGAGa -3'
miRNA:   3'- gUCUCCUCCUCgUCCUC-CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36455 0.83 0.080778
Target:  5'- gGGGGGAGGGGggaGGGGGGAGGGGGAu -3'
miRNA:   3'- gUCUCCUCCUCg--UCCUCCUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 33602 0.81 0.108728
Target:  5'- gCAGGGGccggcggagaccaccAGGAGCAGGGGGGGGcGGGGGg -3'
miRNA:   3'- -GUCUCC---------------UCCUCGUCCUCCUCC-UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 33402 0.81 0.109575
Target:  5'- gAGAGGGGGGcGCGGGcggggagcgccggcGGGAGGAGGGGg -3'
miRNA:   3'- gUCUCCUCCU-CGUCC--------------UCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 49678 0.81 0.115972
Target:  5'- gCGGGGGAGGGGguGGuggguguguauauGGGGGGGGGGGg -3'
miRNA:   3'- -GUCUCCUCCUCguCC-------------UCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 35859 0.81 0.122402
Target:  5'- uCAGAGGgcgccggauGGGAgGgAGGAGGAGGAGGAGc -3'
miRNA:   3'- -GUCUCC---------UCCU-CgUCCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 67145 0.8 0.132163
Target:  5'- -cGGGGGGGGGCGGGGuGGGGuGGGGAGa -3'
miRNA:   3'- guCUCCUCCUCGUCCU-CCUC-CUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 34396 0.8 0.139064
Target:  5'- gCGGGGGGGGGGguGGGGcggcggccgguGGGGAGGAGg -3'
miRNA:   3'- -GUCUCCUCCUCguCCUC-----------CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 36484 0.79 0.150036
Target:  5'- gGGGGGAGGGGgAuggggggauggGGGGGAGGAGGGGc -3'
miRNA:   3'- gUCUCCUCCUCgU-----------CCUCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 33700 0.79 0.150036
Target:  5'- gAGGGGAgGGGGCgGGGAGGcGGGGGAGa -3'
miRNA:   3'- gUCUCCU-CCUCG-UCCUCCuCCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.