miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 3' -59.3 NC_006560.1 + 5802 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 5840 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 5878 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 5916 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 5954 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 5991 0.79 0.165889
Target:  5'- aGGGGGAaGGGCAGGGGGcAGGGGGAa -3'
miRNA:   3'- gUCUCCUcCUCGUCCUCC-UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6016 0.68 0.649147
Target:  5'- aAGGGcaGGGGGCAGGGGGaAGGGcGAGa -3'
miRNA:   3'- gUCUCc-UCCUCGUCCUCC-UCCUcCUC- -5'
31133 3' -59.3 NC_006560.1 + 6573 0.69 0.598803
Target:  5'- aCGGGGGcucGGGGGCucGGGGGGAcGGGGGc- -3'
miRNA:   3'- -GUCUCC---UCCUCG--UCCUCCU-CCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 6621 0.68 0.618919
Target:  5'- uCGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- -GUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6672 0.68 0.659207
Target:  5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6704 0.66 0.72857
Target:  5'- cCGGGGGcucGGGGGCucGGGGGGAccGGGGGc- -3'
miRNA:   3'- -GUCUCC---UCCUCG--UCCUCCU--CCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 6739 0.68 0.659207
Target:  5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6771 0.67 0.679255
Target:  5'- cCGGGGGcucGGGGGCucGGGGGcucGGGGGGAn -3'
miRNA:   3'- -GUCUCC---UCCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6804 0.7 0.519798
Target:  5'- cCGGGGGcucGGGGGCucGGGGGGAccgGGGGGAc -3'
miRNA:   3'- -GUCUCC---UCCUCG--UCCUCCU---CCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 8197 0.72 0.436309
Target:  5'- uGGGGaGAGGgauucGGCGGGGGGAGG-GGAc -3'
miRNA:   3'- gUCUC-CUCC-----UCGUCCUCCUCCuCCUc -5'
31133 3' -59.3 NC_006560.1 + 8801 0.72 0.436309
Target:  5'- aCGGAGGGGGcGUcGGAGG-GGAGcGAGu -3'
miRNA:   3'- -GUCUCCUCCuCGuCCUCCuCCUC-CUC- -5'
31133 3' -59.3 NC_006560.1 + 8858 0.66 0.756316
Target:  5'- uCGGGcGGGGucggucuGGGguGGGGGAGGcGGGGGg -3'
miRNA:   3'- -GUCU-CCUC-------CUCguCCUCCUCC-UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 9076 0.72 0.40175
Target:  5'- aGGGGGAGGGGCGGcGGGGcgacGGcGGAGc -3'
miRNA:   3'- gUCUCCUCCUCGUC-CUCCu---CCuCCUC- -5'
31133 3' -59.3 NC_006560.1 + 9639 0.67 0.718833
Target:  5'- aAGGGGuGGGuGCGGccGGAGGGGGGc -3'
miRNA:   3'- gUCUCCuCCU-CGUCcuCCUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 10219 0.68 0.639074
Target:  5'- uGGGGGuAGGGGUAGGGGuGGGcGGcGGGGg -3'
miRNA:   3'- gUCUCC-UCCUCGUCCUC-CUC-CU-CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.