miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 3' -50.4 NC_006560.1 + 72350 0.66 0.995358
Target:  5'- ----cGGGGGUGUGGggcgcggccCUCGCgGggGCg -3'
miRNA:   3'- auauuUCUCCACGCU---------GAGCGgCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 105835 0.66 0.995358
Target:  5'- ------cGGGUGCGACgccgCGCuCGU-GCg -3'
miRNA:   3'- auauuucUCCACGCUGa---GCG-GCAaCG- -5'
31134 3' -50.4 NC_006560.1 + 140642 0.66 0.994584
Target:  5'- --cGGGGGGGacggGCGugUCGCuCGccGCg -3'
miRNA:   3'- auaUUUCUCCa---CGCugAGCG-GCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 74673 0.66 0.994584
Target:  5'- ----cGGAGGUGCGcGC-CGCCc-UGCg -3'
miRNA:   3'- auauuUCUCCACGC-UGaGCGGcaACG- -5'
31134 3' -50.4 NC_006560.1 + 134682 0.66 0.994584
Target:  5'- -----cGGGGUcGCGgacccgccACUCGCCGcgGCg -3'
miRNA:   3'- auauuuCUCCA-CGC--------UGAGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 34728 0.66 0.994584
Target:  5'- ----cGGGGGU-CG-CUCGCCGcgGCg -3'
miRNA:   3'- auauuUCUCCAcGCuGAGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 126481 0.66 0.992724
Target:  5'- --gGAAGAaccuGGUGCGguGCUCGCgGUgGUa -3'
miRNA:   3'- auaUUUCU----CCACGC--UGAGCGgCAaCG- -5'
31134 3' -50.4 NC_006560.1 + 101787 0.66 0.992724
Target:  5'- ----cGGGGGcgGCGGCaggaCGCCGUgGCg -3'
miRNA:   3'- auauuUCUCCa-CGCUGa---GCGGCAaCG- -5'
31134 3' -50.4 NC_006560.1 + 23554 0.66 0.992724
Target:  5'- -----cGAGGgcuucggcgGCGAcCUCGCCGccgUGCc -3'
miRNA:   3'- auauuuCUCCa--------CGCU-GAGCGGCa--ACG- -5'
31134 3' -50.4 NC_006560.1 + 18007 0.66 0.992724
Target:  5'- -cUGGAGAGG-GCGcACgCGCCGcccGCg -3'
miRNA:   3'- auAUUUCUCCaCGC-UGaGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 82131 0.66 0.99162
Target:  5'- --gGGGGGGGUGUGuCggCGCCGagcGCg -3'
miRNA:   3'- auaUUUCUCCACGCuGa-GCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 75183 0.67 0.990386
Target:  5'- -----cGAGG-GCGACcgCGCCGcgcUGCu -3'
miRNA:   3'- auauuuCUCCaCGCUGa-GCGGCa--ACG- -5'
31134 3' -50.4 NC_006560.1 + 57743 0.67 0.990386
Target:  5'- --gGAGGGGGgacGCGGCgCGCgCGUcgGCg -3'
miRNA:   3'- auaUUUCUCCa--CGCUGaGCG-GCAa-CG- -5'
31134 3' -50.4 NC_006560.1 + 17491 0.67 0.990386
Target:  5'- --gGGGGGGGUGgGGCUggagCGCgCGggGCc -3'
miRNA:   3'- auaUUUCUCCACgCUGA----GCG-GCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 64939 0.67 0.989015
Target:  5'- --cGGGGAcGGgGgGGCUCGCCGccgGCg -3'
miRNA:   3'- auaUUUCU-CCaCgCUGAGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 43716 0.67 0.989015
Target:  5'- -----cGAGcgcaGCGACUCGCCGggcGCg -3'
miRNA:   3'- auauuuCUCca--CGCUGAGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 116954 0.67 0.989015
Target:  5'- --gGAAGAGGU-CGGCcgugCGCCGcaggGCg -3'
miRNA:   3'- auaUUUCUCCAcGCUGa---GCGGCaa--CG- -5'
31134 3' -50.4 NC_006560.1 + 128804 0.67 0.989015
Target:  5'- ---cAAGGGGcgcUGCGACgCGUCGgcGCg -3'
miRNA:   3'- auauUUCUCC---ACGCUGaGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 102305 0.67 0.988123
Target:  5'- --cGGGGAGGUuCGugUCGUagcgcagcgggggguCGUUGCg -3'
miRNA:   3'- auaUUUCUCCAcGCugAGCG---------------GCAACG- -5'
31134 3' -50.4 NC_006560.1 + 2273 0.67 0.985821
Target:  5'- -------cGGUGCGAgugcgcCUCGCCGcgGCg -3'
miRNA:   3'- auauuucuCCACGCU------GAGCGGCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.