miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31144 3' -61.4 NC_006560.1 + 143321 0.66 0.673224
Target:  5'- cCCcCCCGCgGCgACCccGAGGcggcGGGCGc -3'
miRNA:   3'- -GGaGGGCG-CGgUGGaaCUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 67082 0.66 0.663469
Target:  5'- gCUgCCCGCGgCGCCagaGAGcGcGGGCGg -3'
miRNA:   3'- gGA-GGGCGCgGUGGaa-CUC-CaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 17471 0.66 0.692635
Target:  5'- aCCUCCgGgGugaguCCGCCggggGGGGUGGGg- -3'
miRNA:   3'- -GGAGGgCgC-----GGUGGaa--CUCCACCCgc -5'
31144 3' -61.4 NC_006560.1 + 147936 0.66 0.682949
Target:  5'- --gCCCGCgGCCcCCggGAGGcGGGCc -3'
miRNA:   3'- ggaGGGCG-CGGuGGaaCUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 110251 0.66 0.673224
Target:  5'- gCCUCCCGCugGCCcCCUcGAccuucUGGGCGc -3'
miRNA:   3'- -GGAGGGCG--CGGuGGAaCUcc---ACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 33362 0.66 0.673224
Target:  5'- gCCgUCUCGCGCCcgcggcgggGCCgcgGAGaG-GGGCGg -3'
miRNA:   3'- -GG-AGGGCGCGG---------UGGaa-CUC-CaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 92651 0.66 0.677118
Target:  5'- gCCUgCCCGCggGCCggguucgugugcgcgGCCUUGAcccccGG-GGGCGg -3'
miRNA:   3'- -GGA-GGGCG--CGG---------------UGGAACU-----CCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 81689 0.66 0.682949
Target:  5'- gCCgaCCCGCGCCuugAUCUcgucGAGGUccccgaGGGCGa -3'
miRNA:   3'- -GGa-GGGCGCGG---UGGAa---CUCCA------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 11570 0.66 0.682949
Target:  5'- gUCUCCCcgaccucCGCCGCCUcGGGGgucgcgGGGUu -3'
miRNA:   3'- -GGAGGGc------GCGGUGGAaCUCCa-----CCCGc -5'
31144 3' -61.4 NC_006560.1 + 10646 0.66 0.673224
Target:  5'- aCUCCCaCGCCAgCUcgcgcgGGGGUccgcccGGGCGc -3'
miRNA:   3'- gGAGGGcGCGGUgGAa-----CUCCA------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 42464 0.66 0.659559
Target:  5'- aUCUgCCCG-GCCGCCgucggggcggucGAGG-GGGCGg -3'
miRNA:   3'- -GGA-GGGCgCGGUGGaa----------CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 39519 0.66 0.692635
Target:  5'- gCCUCUCGCGUCGCCgcc--GUcGGGCc -3'
miRNA:   3'- -GGAGGGCGCGGUGGaacucCA-CCCGc -5'
31144 3' -61.4 NC_006560.1 + 35632 0.66 0.682949
Target:  5'- cCCgCCCGCcCgGCCUcGGGGUGcGCGg -3'
miRNA:   3'- -GGaGGGCGcGgUGGAaCUCCACcCGC- -5'
31144 3' -61.4 NC_006560.1 + 88930 0.66 0.673224
Target:  5'- gCUCCCGgGCgCGCUgcGAGGcccggccccgaGGGCGg -3'
miRNA:   3'- gGAGGGCgCG-GUGGaaCUCCa----------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 70698 0.66 0.682949
Target:  5'- gCCgCCCGCGCCGCCacGGGcccccGGCGc -3'
miRNA:   3'- -GGaGGGCGCGGUGGaaCUCcac--CCGC- -5'
31144 3' -61.4 NC_006560.1 + 148763 0.66 0.711861
Target:  5'- --cCCCgacggGCGCCAUgUUgGAGG-GGGCGg -3'
miRNA:   3'- ggaGGG-----CGCGGUGgAA-CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 38871 0.66 0.682949
Target:  5'- aCUCCCGCaggguccggGCCACCacGGcGGcccGGGCGu -3'
miRNA:   3'- gGAGGGCG---------CGGUGGaaCU-CCa--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 150297 0.66 0.673224
Target:  5'- cCCgcgCgCGCGCCGCCgc-GGGaGGGCc -3'
miRNA:   3'- -GGa--GgGCGCGGUGGaacUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 147199 0.66 0.692635
Target:  5'- cCCUCCCcCGCCggagGCgCggGGGGccgGGGCGc -3'
miRNA:   3'- -GGAGGGcGCGG----UG-GaaCUCCa--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 85486 0.66 0.682949
Target:  5'- --gCCUGCGCCGCUUgggcucGGGGUcgccGGGCu -3'
miRNA:   3'- ggaGGGCGCGGUGGAa-----CUCCA----CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.