miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31144 3' -61.4 NC_006560.1 + 1 0.68 0.594934
Target:  5'- --cCCCGCGCCGCgUUucccGGcgGGGCGg -3'
miRNA:   3'- ggaGGGCGCGGUGgAAcu--CCa-CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 203 0.66 0.692635
Target:  5'- uCCgcgCgCGCGCCGCCgc-GGGaGGGCc -3'
miRNA:   3'- -GGa--GgGCGCGGUGGaacUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 3993 0.67 0.634092
Target:  5'- aCgCCCGCGgCGCCguagccggcGAGGccggGGGCGg -3'
miRNA:   3'- gGaGGGCGCgGUGGaa-------CUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 5372 0.67 0.624288
Target:  5'- uCCggcgagCCCGCGCCGCCgagcgGAGcGcGcGGCa -3'
miRNA:   3'- -GGa-----GGGCGCGGUGGaa---CUC-CaC-CCGc -5'
31144 3' -61.4 NC_006560.1 + 5449 0.68 0.546587
Target:  5'- cUCUCCUuCGCCGCCcgGGGGcgccgGGGCu -3'
miRNA:   3'- -GGAGGGcGCGGUGGaaCUCCa----CCCGc -5'
31144 3' -61.4 NC_006560.1 + 7474 0.71 0.428411
Target:  5'- gCCcCCCGCGCCACgCgacccccgGGGGUGaGGaCGg -3'
miRNA:   3'- -GGaGGGCGCGGUG-Gaa------CUCCAC-CC-GC- -5'
31144 3' -61.4 NC_006560.1 + 9623 0.68 0.594934
Target:  5'- cCCUggggCCGCGCCGaa--GGGGUGGGUGc -3'
miRNA:   3'- -GGAg---GGCGCGGUggaaCUCCACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 10189 0.72 0.363601
Target:  5'- --aCgUGCGCCACCUcggcgaUGGGGUGGGgGu -3'
miRNA:   3'- ggaGgGCGCGGUGGA------ACUCCACCCgC- -5'
31144 3' -61.4 NC_006560.1 + 10276 0.69 0.508831
Target:  5'- gCUCCCGC-CC-CCUccgcgaGAGG-GGGCGg -3'
miRNA:   3'- gGAGGGCGcGGuGGAa-----CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 10472 0.66 0.702275
Target:  5'- ---gCCaCGCCGCCUcGGGGcccgGGGCGg -3'
miRNA:   3'- ggagGGcGCGGUGGAaCUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 10646 0.66 0.673224
Target:  5'- aCUCCCaCGCCAgCUcgcgcgGGGGUccgcccGGGCGc -3'
miRNA:   3'- gGAGGGcGCGGUgGAa-----CUCCA------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 11570 0.66 0.682949
Target:  5'- gUCUCCCcgaccucCGCCGCCUcGGGGgucgcgGGGUu -3'
miRNA:   3'- -GGAGGGc------GCGGUGGAaCUCCa-----CCCGc -5'
31144 3' -61.4 NC_006560.1 + 14491 0.69 0.518173
Target:  5'- cCCUUCCGCGCauCGCCaccGGGGaUGGGUu -3'
miRNA:   3'- -GGAGGGCGCG--GUGGaa-CUCC-ACCCGc -5'
31144 3' -61.4 NC_006560.1 + 14537 0.76 0.217151
Target:  5'- uCC-CCCGCGCCucCCUcccggGAGG-GGGCGg -3'
miRNA:   3'- -GGaGGGCGCGGu-GGAa----CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 17393 0.72 0.348494
Target:  5'- aCCaCCCGgGCCACCUccGAGGgGGGUu -3'
miRNA:   3'- -GGaGGGCgCGGUGGAa-CUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 17471 0.66 0.692635
Target:  5'- aCCUCCgGgGugaguCCGCCggggGGGGUGGGg- -3'
miRNA:   3'- -GGAGGgCgC-----GGUGGaa--CUCCACCCgc -5'
31144 3' -61.4 NC_006560.1 + 18533 0.71 0.387097
Target:  5'- cCCgcgCCCGCGCCuguaccACCUguggGuGGUcgGGGCGg -3'
miRNA:   3'- -GGa--GGGCGCGG------UGGAa---CuCCA--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 19193 0.67 0.621347
Target:  5'- gCCUCCCcaCGCCGCCggguugccaaaacagGAGacggGGGCGg -3'
miRNA:   3'- -GGAGGGc-GCGGUGGaa-------------CUCca--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 19511 0.69 0.525696
Target:  5'- aCUCCCGcCGCaGCCUgGAGGccacggagcccgGGGCGu -3'
miRNA:   3'- gGAGGGC-GCGgUGGAaCUCCa-----------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 19552 0.67 0.65369
Target:  5'- uCCUCCgGCgGCCcCCcgGAGGcggcaccGGGCGg -3'
miRNA:   3'- -GGAGGgCG-CGGuGGaaCUCCa------CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.